bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eggV2
2,483,276 sequences; 915,453,621 total letters
Query= Eten_3379_orf1
Length=206
Score E
Sequences producing significant alignments: (Bits) Value
5833.PF13_0129 238 6e-62
> 5833.PF13_0129
Length=190
Score = 238 bits (608), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 114/190 (60%), Positives = 143/190 (75%), Gaps = 0/190 (0%)
Query 17 MKTVYSEQSVRVPDGVTVSVRSREVTVKGPHGELKRTFRHLPLVLHTTKDAKRVKVATWQ 76
MKT+ S Q V +P+GV V++ +R+VTV G +G L+R+FRHLP+ + K K +KV W
Sbjct 1 MKTIVSTQKVLIPEGVKVAINARKVTVSGKYGTLRRSFRHLPIDIRLNKLKKYIKVVMWF 60
Query 77 GKKSDIACLRTVCSHLNNMFTGVTKQFEYKMRFVYSHFPINLNIIEGGKVVEIRNFLGEK 136
G +AC+RTVC+HL NMFTGVTK+F YKMR V++HFPIN NI++ +EIRN+LGEK
Sbjct 61 GVPDSLACIRTVCTHLKNMFTGVTKKFLYKMRLVHAHFPINSNIVDNNTRIEIRNYLGEK 120
Query 137 RVRIVKLLPGVVCEKSTNVKDEIALKGTDLELVSRSAALIHQATLVRRKDIRKFLDGIYV 196
VR VK LPGVV EKS NVKDEI + G D+E VS +AALIHQ+ L R KDIRKFLDGIYV
Sbjct 121 SVRFVKALPGVVIEKSPNVKDEIYVSGADIENVSLTAALIHQSVLCRNKDIRKFLDGIYV 180
Query 197 SEKGTLEKTD 206
SE T+EK +
Sbjct 181 SEVTTVEKDE 190
Lambda K H
0.321 0.136 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 51449491716
Database: eggV2
Posted date: Dec 15, 2009 4:47 PM
Number of letters in database: 915,453,621
Number of sequences in database: 2,483,276
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40