bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_3494_orf2 Length=179 Score E Sequences producing significant alignments: (Bits) Value 3702.AT3G06720.2 252 4e-66 > 3702.AT3G06720.2 Length=532 Score = 252 bits (643), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 122/177 (68%), Positives = 141/177 (79%), Gaps = 1/177 (0%) Query 1 KRVCAAGAVPHFVRFLAMEGREQLQFEAAWALTNIASGTQEQTRVVVDCGAVPCFVQLLR 60 + V +AG VP FV FL E +QFEAAWALTNIASGT + T+VV+D AVP FVQLL Sbjct 109 EEVISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLA 168 Query 61 SPKEEVREQAVWALGNIAGDSPSCRDLVLDSDALQPLLEQLNTPGSKLAMLRNATWTLSN 120 SP ++VREQAVWALGN+AGDSP CRDLVL AL PLL QLN +KL+MLRNATWTLSN Sbjct 169 SPSDDVREQAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNE-HAKLSMLRNATWTLSN 227 Query 121 FCRGKPAPAFEKVSPALPTLAALIYSDDAEVLTDACWAVSYLSDGPNERIEAVLQAG 177 FCRGKP P F++V PALP L LI+SDD EVLTDACWA+SYLSDG N++I+ V+QAG Sbjct 228 FCRGKPQPHFDQVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAG 284 Lambda K H 0.319 0.132 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 36430169559 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40