bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_3570_orf3 Length=141 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd8_3270 150 1e-35 > 5807.cgd8_3270 Length=621 Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 66/107 (61%), Positives = 84/107 (78%), Gaps = 0/107 (0%) Query 34 RKVVDTALYDVLEVPPDARPEDIRRQYYRLARKYHPDKNPGDPDAKKKFQQLGEAYQVLG 93 + VVDT YD+L V P+A ++IRRQYYR A++YHPDKNP D DAK KFQ+LGEAYQ+L Sbjct 239 KNVVDTTYYDLLSVSPNADADEIRRQYYRKAKQYHPDKNPDDADAKDKFQKLGEAYQILA 298 Query 94 EEERRAQYDLHGQAAAQDMPIIDSSLFFMMLFGSEALEPYIGKLKMA 140 + ERR +YD +G A DMP+IDS+L F +LFGS++LE Y+GKLKM Sbjct 299 DPERRKRYDEYGIGATYDMPVIDSNLIFTILFGSDSLEKYVGKLKMV 345 Lambda K H 0.318 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22827922775 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40