bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_3591_orf2 Length=291 Score E Sequences producing significant alignments: (Bits) Value 5833.PF13_0124 140 5e-32 > 5833.PF13_0124 Length=259 Score = 140 bits (353), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 122/229 (53%), Gaps = 39/229 (17%) Query 98 SSRQQEQNGLLQSGLSAVKDGA-------------SRMLDGANSVVNATRAT----ISDN 140 ++R +E+ GL+Q + K GA + M DGA+ V N+T A S+ Sbjct 29 NNRNEEEKGLIQKAIDLSKKGAETLQKGLKETLGKNNMNDGASMVSNSTTAESGSMFSNF 88 Query 141 PL----------------------SSQNMLMFGVVAAVGVLFMFLAFLTLPLLVFAPSKF 178 PL S +N +F ++ + VLFM L+F TLP++V P +F Sbjct 89 PLFNNNNQNRENETSSFFAFTTLVSYKNFPLFCILFGISVLFMILSFFTLPMIVITPRQF 148 Query 179 ALLFTMGSLCFLAALALLRGVAALSRHLVEPSRLPFTAVYFSSLFLTLYATLMAKSYVLT 238 FT+ S+CF+++LA L+G + L HL+E RLPFT Y SL TLY TL+ Y+L Sbjct 149 GFFFTVSSICFVSSLAFLKGFSNLYHHLMEKQRLPFTTAYILSLLSTLYFTLINPLYLLA 208 Query 239 LVFSVLQLCGLTSFLVSYIPGGSHMLKFMGQAAWQLLRKAFKCGGSRDL 287 L+ SV+Q+ L SFLVSYIPGG+ +K + A + ++ F+ + DL Sbjct 209 LITSVIQMLALISFLVSYIPGGAGAIKMLINAIYSYVKNLFRRSNTSDL 257 Lambda K H 0.322 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 98412721316 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40