bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eggV2
2,483,276 sequences; 915,453,621 total letters
Query= Eten_3615_orf4
Length=239
Score E
Sequences producing significant alignments: (Bits) Value
5833.PF08_0115 165 1e-39
> 5833.PF08_0115
Length=675
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 117/177 (66%), Gaps = 4/177 (2%)
Query 63 SSTTNSSSSSSSSSSSSKVADTRYYEVLEVQPNASFAEIKKAYYRLALKCHPDKNPGDPE 122
SS +N + + S ++ DT YY+ L ++P A +EIK +YY+LALK HPDKN DPE
Sbjct 225 SSNSNMNDFNVSDCGNNTCVDTTYYDALNIKPTAKLSEIKTSYYKLALKYHPDKNANDPE 284
Query 123 AHKKFQAIGEAYQVLNDPKRRKDYDTFGVSATKTINFIDPALFFMMLFGSEQLDPYTGKL 182
A KFQ I EAYQVL+D +RR+ Y+ +G++ATK + IDP++FFMMLF SE+L YTG L
Sbjct 285 AKLKFQKINEAYQVLSDDERRRQYNKYGLNATKDMILIDPSIFFMMLFSSEELSDYTGTL 344
Query 183 KMAKLLEVLTQDDFMSTVSGEGGVDLREGIMKALEEDQKKREVSLALQLREKVQSFV 239
++A +++ F +S E + ++ +E +QK REV LAL LR+++Q +V
Sbjct 345 RIAFFVQLA----FEGNMSIEDKKSSNQVMINEMEVEQKIREVELALLLRKRLQPYV 397
Lambda K H
0.304 0.120 0.323
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 69865650655
Database: eggV2
Posted date: Dec 15, 2009 4:47 PM
Number of letters in database: 915,453,621
Number of sequences in database: 2,483,276
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40