bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_3657_orf1 Length=150 Score E Sequences producing significant alignments: (Bits) Value 5833.PF11_0310 73.9 1e-12 > 5833.PF11_0310 Length=609 Score = 73.9 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 3/109 (2%) Query 42 AKQATPLNLNRYVLLLLYILQTFMTGCVYFGWAPLSAVLLKAGVFSFKCTPDGKGGFVND 101 ++Q TP N+NR VLL +Y + +T ++FGW LS +L + + +KC + G + Sbjct 76 SEQKTPFNINRSVLLFVYFMLIVLTNRLFFGWPNLSNLLFREDTYIWKCQKNEHGEY--- 132 Query 102 QRQQGNNYICDQQDASVQSLFVITLATHCTMSAVAGAMMDTLGPKITSM 150 R Y CD+QD +VQ++F+ + + S G ++D LG + + + Sbjct 133 DRFDDKRYSCDEQDKAVQTIFIFGSSAYFAFSFFNGLIVDYLGSRFSML 181 Lambda K H 0.325 0.137 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22764965652 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40