bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eggV2
2,483,276 sequences; 915,453,621 total letters
Query= Eten_4498_orf1
Length=236
Score E
Sequences producing significant alignments: (Bits) Value
3702.AT4G02570.3 167 3e-40
> 3702.AT4G02570.3
Length=738
Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 135/234 (57%), Gaps = 31/234 (13%)
Query 4 QRAISTAPFCTLLASFCDRILRKAGGERMGDDEIEECLMKVVEIFNYVTDKDLFAEQYRT 63
+ ++ + LLA+FCD IL+K G E++ D+ IE+ L KVV++ Y++DKDLFAE YR
Sbjct 376 NKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDLFAEFYRK 435
Query 64 QLGRRLLHETSASLELERLLIAKLRLKCGAHFTAKVEGMVNDLQVAAGLMRSFQQQQQEE 123
+L RRLL + SA+ + ER ++ KL+ +CG FT+K+EGMV DL +A SF
Sbjct 436 KLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQNSF------- 488
Query 124 QLKRKTDEQESKVNESASRIKESVSSATVETVMIGDVEFSVQALSTAHWPTYPAPDLRLP 183
E N +A+ ++ +V L+T WP+Y + D+ LP
Sbjct 489 -------EDYLGSNPAAN----------------PGIDLTVTVLTTGFWPSYKSFDINLP 525
Query 184 PQLAQCVNAFEQFYTSQTQHRKLTWVNSLGTALVAAQLQNRQ-DLICNTMQAAL 236
++ +CV F+ FY ++T+HRKLTW+ SLGT + + + +LI +T QAA+
Sbjct 526 SEMIKCVEVFKGFYETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAAV 579
Lambda K H
0.319 0.130 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 68043068464
Database: eggV2
Posted date: Dec 15, 2009 4:47 PM
Number of letters in database: 915,453,621
Number of sequences in database: 2,483,276
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40