bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_5046_orf1 Length=110 Score E Sequences producing significant alignments: (Bits) Value 101510.RHA1_ro06649 60.5 1e-08 > 101510.RHA1_ro06649 Length=309 Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 2/75 (2%) Query 7 DFTQDVLILAGDVHHELEGLKGSLELFCSGFGHVTFVPGNHELWVTHKDRDMGIGDSLQK 66 D +D LI+AGDV + + ++ +L+L S F V +VPGNHELW T KD G + + Sbjct 28 DSPEDWLIVAGDVSEKTDDIRWALKLLRSRFAEVIWVPGNHELWTTAKDPVQIHGAA--R 85 Query 67 FDSILRLCESLGIHT 81 +D ++ +C +G+ T Sbjct 86 YDYLVTMCREIGVIT 100 Lambda K H 0.323 0.142 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23096258976 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40