bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_5089_orf2 Length=80 Score E Sequences producing significant alignments: (Bits) Value 177439.DP0053 83.6 2e-15 > 177439.DP0053 Length=292 Score = 83.6 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 39/72 (54%), Positives = 55/72 (76%), Gaps = 4/72 (5%) Query 1 GYKFLRGMHLNDSKSELSSGLDRHELLGKGHLGLAPFKYIMQHQTRFKDMPLILETPDPT 60 G+K+LRGMHLND+KSE S +DRH+ LG G++G F+YIM+ RF D+PLILET D Sbjct 208 GFKYLRGMHLNDAKSEFFSRVDRHQSLGAGNIGWEAFRYIMK-DDRFDDIPLILETVDT- 265 Query 61 EGTIWKKEIKQM 72 ++W++EIK++ Sbjct 266 --SLWQEEIKKL 275 Lambda K H 0.319 0.139 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22875389805 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40