bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_5414_orf1 Length=168 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd6_1740 109 3e-23 > 5807.cgd6_1740 Length=5542 Score = 109 bits (272), Expect = 3e-23, Method: Composition-based stats. Identities = 53/137 (38%), Positives = 82/137 (59%), Gaps = 2/137 (1%) Query 3 EELFVFKRQFTQSHAVYCILNYLFCMPDISPNKVLLDLQTGQALQAELKACYCAASLLLA 62 ++ F+F +QFT + I +Y+ + D++P K+ + L TGQ Q+ELK+ Y +++LL+ Sbjct 5302 DQSFLFTKQFTTHLGLLSIFSYILGVNDVTPGKLFISLDTGQVYQSELKSSYVSSTLLID 5361 Query 63 FGDRIPFRLTRNIELLIDVFGRAGLLPGCMYTLVCCLQSYSSHFSNAAALLIRDDVAFF- 121 +++PFRLTRN+E L+ FG+ G+LPG M CLQ Y H N L+RDD+ F Sbjct 5362 KTEKVPFRLTRNMEHLMGPFGKNGILPGTMLAFAQCLQKYEFHVRNLLCSLLRDDLHAFS 5421 Query 122 -YRQKQQQQQQLLLLAP 137 +R Q Q + L P Sbjct 5422 VHRALQIPQNRNLYQKP 5438 Lambda K H 0.329 0.139 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 30377245073 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40