bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_5445_orf1 Length=120 Score E Sequences producing significant alignments: (Bits) Value 5833.PF14_0649 142 2e-33 > 5833.PF14_0649 Length=2558 Score = 142 bits (359), Expect = 2e-33, Method: Composition-based stats. Identities = 64/90 (71%), Positives = 78/90 (86%), Gaps = 0/90 (0%) Query 30 RPTLFNLLEALASDSVTTPDQRNSIRGIVTDFLNHDLPHSKVYSFIGAVVGHDVLHTIVR 89 RPTLFNLLE LA+ ++TTPDQR IRGIVTDFLN++LPH K+Y++IGAVVGHD+LH I++ Sbjct 484 RPTLFNLLEVLANHNITTPDQRVCIRGIVTDFLNNELPHGKIYAYIGAVVGHDILHDIIK 543 Query 90 KLENEPGRLGVPDAGGLARIEKAFGLSKTT 119 KLE +P R VPDA GLARIE AFGLSK++ Sbjct 544 KLEKDPNRNVVPDASGLARIEAAFGLSKSS 573 Lambda K H 0.313 0.131 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23080484097 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40