bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_5538_orf2 Length=95 Score E Sequences producing significant alignments: (Bits) Value 5833.PF10_0181 70.5 2e-11 > 5833.PF10_0181 Length=708 Score = 70.5 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 32/81 (39%), Positives = 54/81 (66%), Gaps = 0/81 (0%) Query 1 FRDVPQYFWNDDRWQYFWRRLYVHLEIQKRIKLLNNRYFCIHELLKVVREERRSRQEFRL 60 F D+P+YFWN +++ W +Y ++EI +RIK+LN RY + LKV++ E +++ F Sbjct 626 FLDIPEYFWNKVEYEHAWFEIYKYMEIPERIKILNKRYNYYKDFLKVIKTEVYNKKTFYT 685 Query 61 TWIIVILLFFQVVALALRNFV 81 I+++LLF V+AL L +F+ Sbjct 686 YRIVMLLLFIHVLALLLNDFL 706 Lambda K H 0.335 0.148 0.494 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22621220430 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40