bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_5541_orf2 Length=113 Score E Sequences producing significant alignments: (Bits) Value 5833.PF11_0098 77.0 2e-13 > 5833.PF11_0098 Length=343 Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 61/119 (51%), Gaps = 28/119 (23%) Query 2 ITTEEAQQWSTRLKDAMHKHQVRQEFISIDKDGDG------------------------- 36 IT EE WS+ LK+ + QV+ E ID D DG Sbjct 79 ITEEELNTWSSFLKNEIFLKQVQAEMGQIDSDKDGFISLNELNDAFAQNLDAKEVEKHSE 138 Query 37 ---KRFAAVDKDKSGSLSLEEVTVLMDPGKDATLMQIEVDEIMAAQDKDKDGNISLDEF 92 KRF VDKDK G LS+ EV +L+DP KD L ++E++EI+ D +KDG ISLDEF Sbjct 139 GLLKRFQIVDKDKDGKLSINEVGLLIDPMKDEELKELEINEILEHHDVNKDGKISLDEF 197 Lambda K H 0.311 0.130 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22857864480 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40