bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_5546_orf1 Length=92 Score E Sequences producing significant alignments: (Bits) Value 221109.OB1923 63.5 2e-09 > 221109.OB1923 Length=518 Score = 63.5 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 0/61 (0%) Query 8 LYQLGATYGPGIRHLQAWRLIMPVFLHVGIVHLLFNVLFTLHMGLDKEIKYGRTNFLILY 67 L Q+GA Y P I + WRL+ +FLH+G VH+L N++ ++G E +GRT FL++Y Sbjct 214 LIQMGAKYNPLIMEGEWWRLLTSMFLHIGFVHILMNMVALFYLGTAVERIFGRTRFLVIY 273 Query 68 F 68 F Sbjct 274 F 274 Lambda K H 0.329 0.145 0.472 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22844715270 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40