bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_5587_orf1 Length=122 Score E Sequences producing significant alignments: (Bits) Value 10090.ENSMUSP00000081690 112 3e-24 > 10090.ENSMUSP00000081690 Length=1687 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 55/118 (46%), Positives = 74/118 (62%), Gaps = 0/118 (0%) Query 1 VTIGGVSVRHHPSHARCSIGYCPQFDVLLPYLTIEETLWLYAALRGIPRGRRKEEVAELI 60 V I G S+ + R +GYCPQFD LL Y+T E L +YA + GIP + V L+ Sbjct 1420 VFIEGYSITRNILKVRSKVGYCPQFDALLDYMTSREILTMYARVWGIPENSIRAYVDNLL 1479 Query 61 MMMRLSEMAKVQVGTLSGGWRRRVSSSVAFLGNPTVVFLDEPTAGMDILYRRTFWDSV 118 M+ L A + TLSGG +RR+S+++A +GN TVVFLDEP+ GMD L RR W++V Sbjct 1480 KMLYLKPQADKFIYTLSGGNKRRLSTAIAIMGNSTVVFLDEPSTGMDPLARRMLWNAV 1537 Lambda K H 0.325 0.139 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22916587881 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40