bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_5854_orf2 Length=140 Score E Sequences producing significant alignments: (Bits) Value 5833.MAL13P1.234 178 5e-44 > 5833.MAL13P1.234 Length=5987 Score = 178 bits (451), Expect = 5e-44, Method: Composition-based stats. Identities = 102/140 (72%), Positives = 118/140 (84%), Gaps = 2/140 (1%) Query 1 LSTFTFDSEYINRRQRERV-RNTASMRDGFLSAGKNIGEGVWSLTNIVTKPIEGAQREGV 59 LS TFDSEYINRRQ+ER + +M++G +SA KNIGEGV SL+NIVTKPIEGAQ+EG Sbjct 5719 LSNLTFDSEYINRRQKERTFKTNTNMKEGLISAVKNIGEGVLSLSNIVTKPIEGAQKEGF 5778 Query 60 GGFFKGIGKGIVGSLVKPLDKVGQAVSDVTRGIKAEVSKPIGASKFRNERRRKPRML-GE 118 GGFFKGIGKG+ GSLVKPLDKVGQAVSDVTRGIKAEVSKPIG K++ +R RKPRML GE Sbjct 5779 GGFFKGIGKGVAGSLVKPLDKVGQAVSDVTRGIKAEVSKPIGGHKYKTKRHRKPRMLWGE 5838 Query 119 LGEIRPYDETEATLRECLGL 138 G+++ Y+ EA LRECLGL Sbjct 5839 YGKLKEYNINEAELRECLGL 5858 Lambda K H 0.317 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22914837435 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40