bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_6141_orf2 Length=142 Score E Sequences producing significant alignments: (Bits) Value 5478.CAGL0A01870g 78.6 5e-14 > 5478.CAGL0A01870g Length=794 Score = 78.6 bits (192), Expect = 5e-14, Method: Composition-based stats. Identities = 38/70 (54%), Positives = 47/70 (67%), Gaps = 0/70 (0%) Query 2 GIHGISGIHGISGISGINGISGIHGIRGIHGIHGISGIRGIHGIRGIHGIRGIHGIHGIS 61 GI GISGI GI G+ GI G SGI G GI G G+ G+ G+ G+ G+ G+ GI G+ GI Sbjct 342 GIPGISGIPGIPGMPGIPGASGIPGTSGIPGASGVPGVDGVDGVPGVDGVDGIPGVDGIP 401 Query 62 GINGIHGISG 71 GI+GI GI G Sbjct 402 GIDGISGIDG 411 Lambda K H 0.328 0.146 0.509 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22741008115 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40