bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_6154_orf1 Length=125 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd5_2530 76.3 3e-13 > 5807.cgd5_2530 Length=899 Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 0/117 (0%) Query 2 ESSSSSSSSSSSVSLSNVVVFYLCRMGAAPLSLHGLLLGPNTVLGFRVCDGLTEALWVEW 61 ES SS +++ + ++ CR G AP+S++ LL+GP+T+ G R+ D L + + Sbjct 683 ESKSSRDDEVGYLNIGSCLLLLNCRFGIAPVSMNELLIGPDTIKGIRLIDLLLSTFYRDV 742 Query 62 LLGLGFRVWALSLHLSWYSFGVYCCHLLLQLLYLLLSQATRVLVLRRFELKLLLEGL 118 L R L+L +W S GV+ H+ + Y + S R+L LRRFELK+L + + Sbjct 743 LFIFVTRGILLTLCFTWASLGVFVSHITFMIFYGITSHTIRLLALRRFELKILFQKI 799 Lambda K H 0.326 0.140 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22670743557 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40