bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_6224_orf1 Length=94 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd1_580 75.9 4e-13 > 5807.cgd1_580 Length=752 Score = 75.9 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 10/100 (10%) Query 1 NRSQADIKAGKSVQRCLEEERQYFKSHGVYGHMGQQYWGIPSLVEKLTRVLFLHIKHVLP 60 NRS AD+KAGKS++ LE+E +F +H VY ++ + G +LV KLT+VLF HI+ LP Sbjct 174 NRSSADLKAGKSIKDALEDEATFFSTHPVYRNLSPELVGTKNLVSKLTKVLFKHIRTFLP 233 Query 61 EIRKESKPRP----------GLSRPASRSSARECLWSPAT 90 +IR+E R G S P S + +W+ T Sbjct 234 DIRREINARIRTLSSRLDEFGQSVPLESSDRTQLMWAMIT 273 Lambda K H 0.319 0.132 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22695718710 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40