bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_6336_orf1 Length=84 Score E Sequences producing significant alignments: (Bits) Value 5833.PF14_0067 70.9 1e-11 > 5833.PF14_0067 Length=1272 Score = 70.9 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query 2 CADKGYPVASTGISCKGNEAMLADCPAEPPTATCLKHDDDVVVKCTNRLSGVAPEPGTIR 61 CA YP AS+GI C G+E ++ C A+ + C+ H DDV+++C + S G IR Sbjct 471 CAGYKYPFASSGILCTGHEKDISKCNADD-FSHCVDHHDDVIIQCLHYSSNELINDGAIR 529 Query 62 IVGPTGTPAQSGIGRLQFYENG 83 +V G P+ +GIGRLQ Y +G Sbjct 530 LVDINGAPSNNGIGRLQIYYHG 551 Lambda K H 0.317 0.137 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22587329789 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40