bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_6588_orf1 Length=116 Score E Sequences producing significant alignments: (Bits) Value 5833.PF11_0174 82.0 5e-15 > 5833.PF11_0174 Length=700 Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 4/116 (3%) Query 2 PNKNTENLEAPVADSRTYLSRHGG-VSTALELELSDETVPLNWVYDTKDNLHRNEWKMLA 60 PNKNT N+ + D + YL + + L + LSD+ V +Y+T+DN HR++WK+LA Sbjct 61 PNKNTYNV--GITDYKKYLLENNYEFVSELNVILSDDYVLYGDIYNTQDNEHRSKWKVLA 118 Query 61 VKDKEKKVVGGWTAVYDEGFEVHLTNKTRLFAILKYSVKQNCPEAKDGDLEDSNGE 116 V D+ K+V+G WT + DEGFE+ + N+T A++ Y C D D DSNG+ Sbjct 119 VYDENKRVIGTWTTICDEGFEIKIGNETYA-ALMHYEPNGKCGPVSDEDSLDSNGD 173 Lambda K H 0.310 0.129 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22619469984 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40