bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_6656_orf1 Length=156 Score E Sequences producing significant alignments: (Bits) Value 5833.PFF1365c 100 1e-20 > 5833.PFF1365c Length=10287 Score = 100 bits (249), Expect = 1e-20, Method: Composition-based stats. Identities = 42/73 (57%), Positives = 55/73 (75%), Gaps = 0/73 (0%) Query 1 ERPFLVVFRGEGATDFGGPFQEFLSGVANEVMGPLAESPDELLPTFLACLPSFNSTHAIG 60 +RPF+VVF GEGATDFGGPF E+LS ++ EVMG L++SPD+ LP F C+P N T AIG Sbjct 9632 DRPFMVVFVGEGATDFGGPFHEYLSSISREVMGKLSDSPDKSLPVFPLCIPCPNYTQAIG 9691 Query 61 PHQDSVVLRPDPS 73 QD+V++ P + Sbjct 9692 ARQDTVIINPQST 9704 Lambda K H 0.311 0.134 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 24371502831 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40