bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_6704_orf2 Length=127 Score E Sequences producing significant alignments: (Bits) Value 5833.PFF1315w 73.9 1e-12 > 5833.PFF1315w Length=1712 Score = 73.9 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 70/123 (56%), Gaps = 4/123 (3%) Query 7 NDRWRLYLPHVEKLLDAEGILLLRQTCRLLCKHKYRPADGVLSFGMFRGVDARVLMEQVV 66 N+RW+ Y+ ++E LD I+ L QTC+ K K++ A L F + G + ++L E V Sbjct 259 NERWKRYIKNIEPFLDVHTIINLSQTCKFFYKRKFKVAYNRLIFKSYLGYNPKILYEYVF 318 Query 67 PLACKAVHPEVRAAGLSLDFSGCSLLKDASVARLMDVLHGRKEDN---IIGGVLKSLCLD 123 P+ + +H VR L LDF+ C+L+KD +VA +++ ++ + N + L+ + D Sbjct 319 PVIYRHLHRSVRRR-LCLDFTLCTLIKDITVANILNEIYNFETLNTKHLFIYNLQEIYFD 377 Query 124 FCY 126 +C+ Sbjct 378 YCH 380 Lambda K H 0.328 0.144 0.461 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22506847341 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40