bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_0718_orf1 Length=75 Score E Sequences producing significant alignments: (Bits) Value At1g27350 79.0 2e-15 At1g27330 79.0 2e-15 Hs7657552 45.8 2e-05 CE11548 43.9 6e-05 CE18803 29.6 1.4 At5g60270 27.7 6.0 > At1g27350 Length=68 Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 36/65 (55%), Positives = 47/65 (72%), Gaps = 0/65 (0%) Query 7 MAGTNRKYSKKIEAFDRSITKRGHAPESRHKKGKGYPVGPIVLGVFLFVVVGSAIIQIIS 66 M + R +KIE FD++I KRG PE+ KKGK YPVGPI+LG F+FVV+GS++ QII Sbjct 1 MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60 Query 67 SAQRG 71 +A G Sbjct 61 TATSG 65 > At1g27330 Length=68 Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 36/65 (55%), Positives = 47/65 (72%), Gaps = 0/65 (0%) Query 7 MAGTNRKYSKKIEAFDRSITKRGHAPESRHKKGKGYPVGPIVLGVFLFVVVGSAIIQIIS 66 M + R +KIE FD++I KRG PE+ KKGK YPVGPI+LG F+FVV+GS++ QII Sbjct 1 MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60 Query 67 SAQRG 71 +A G Sbjct 61 TATSG 65 > Hs7657552 Length=66 Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 1/54 (1%) Query 19 EAFDRSITKRGH-APESRHKKGKGYPVGPIVLGVFLFVVVGSAIIQIISSAQRG 71 E ++IT+RG+ A SR+ + VGP +L +F+FVV GSAI QII S + G Sbjct 12 EKHSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQIIQSIRMG 65 > CE11548 Length=65 Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 0/51 (0%) Query 21 FDRSITKRGHAPESRHKKGKGYPVGPIVLGVFLFVVVGSAIIQIISSAQRG 71 F +++ RG+ +S YP P ++G+F+FVV GSA+ +II + G Sbjct 14 FSKNVNNRGNVAKSLKPAEDKYPAAPWLIGLFVFVVCGSAVFEIIRYVKMG 64 > CE18803 Length=646 Score = 29.6 bits (65), Expect = 1.4, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 0/36 (0%) Query 9 GTNRKYSKKIEAFDRSITKRGHAPESRHKKGKGYPV 44 G NRK K+I+ D S H+ +RH + + Y V Sbjct 594 GANRKTKKEIKKLDNSTIVEYHSESNRHLRRQNYQV 629 > At5g60270 Length=668 Score = 27.7 bits (60), Expect = 6.0, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 0/38 (0%) Query 25 ITKRGHAPESRHKKGKGYPVGPIVLGVFLFVVVGSAII 62 I+K P S KK PV ++LG+ F+V+G ++ Sbjct 267 ISKLPKVPHSSTKKKSTSPVLSVLLGLIAFIVLGILVV 304 Lambda K H 0.321 0.138 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1181410888 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40