bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_0821_orf1
Length=150
Score E
Sequences producing significant alignments: (Bits) Value
SPBC3B9.17 36.6 0.020
7301178 32.3 0.31
CE26183 32.3 0.38
Hs20543669 32.0 0.40
At1g02660 30.4 1.4
At3g10360 30.0 1.9
At1g10500 29.6 2.5
At5g03900 28.9 3.7
At1g73740 28.9 3.9
Hs6912310 27.7 8.5
Hs20538007 27.7 8.7
> SPBC3B9.17
Length=205
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 51/135 (37%), Gaps = 37/135 (27%)
Query 9 YIKQRRKGSVAPAAAGERTPPAETPAASDCLGLRVAVSGGGCSGYKYSFAVVSLEEAERD 68
Y+K K + A ER P + LRV V GGGC GY+ SF ++ +
Sbjct 99 YVKDSAKKQLEKIA--ERKPEENSV-------LRVTVDGGGCHGYQVSF---RMDNKIGN 146
Query 69 GDLIFRLSPEVACEEKTSLEDGTISSTSSASNDWFVCFHPSALRLVESGSFVAFESSLGG 128
D +F + SL + SGS + + + L G
Sbjct 147 ADTVFVRGKARVVADNISLP-------------------------LISGSEIEYTNELIG 181
Query 129 SSFVLKKNKKASTTC 143
SSF L N +A T+C
Sbjct 182 SSFQLLNNPRAKTSC 196
> 7301178
Length=120
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query 41 LRVAVSGGGCSGYKYSFAV-VSLEEAER 67
LRV V GGGCSG++Y F + L E +R
Sbjct 36 LRVTVEGGGCSGFQYKFDLDKQLNEDDR 63
> CE26183
Length=203
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query 41 LRVAVSGGGCSGYKYSFAVVSLEEAERDGDLIFRLSPEVACEEKTSLEDGTISSTSSASN 100
LR+ V GGGCSG++Y + L++ + DL+++ S A + +++ ++ A+
Sbjct 116 LRLEVDGGGCSGFEYK---IRLDKKINNDDLLWKSSENGA---EIVVDELSLGFLKGATV 169
Query 101 DWFVCFHPSALRLVES 116
D+ S+ R+V +
Sbjct 170 DFVEDLMKSSFRIVNN 185
> Hs20543669
Length=154
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query 41 LRVAVSGGGCSGYKYSFAVVSLEEAERDGDLIF 73
LR+ V GGGCSG++Y F SL+ D +F
Sbjct 70 LRLQVEGGGCSGFQYKF---SLDTVINPDDRVF 99
> At1g02660
Length=713
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query 60 VSLEEAERDGDLIFRLSPEVACEE--KTSLEDGTISSTSSASNDWFVC 105
V+L AE D+ + ++ VA EE K ++ D + ST S+ DWF+C
Sbjct 305 VNLTNAESSSDVAYSVTSVVAAEEDVKQAVADD-LKSTISSPCDWFIC 351
> At3g10360
Length=1031
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 24/104 (23%)
Query 29 PAETPAASDCLGLRVAVSGG----------------GCSGY------KYSFAVVSLEEAE 66
P E A +D + LR AV+ G G SGY + SFA + E E
Sbjct 177 PVEQ-AENDLMELRNAVAQGRSQKVQRLDQGREDLIGLSGYSGLGPRRKSFADILQEGLE 235
Query 67 RDGDLIFRLSPEVACEEKTSLEDGTISSTSSASN-DWFVCFHPS 109
RD L +LS +C ++D + S SA D + FH S
Sbjct 236 RDAALGSQLSRPASCNTFRDMKDAAVLSNFSAGGFDSPLAFHDS 279
> At1g10500
Length=180
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 0/49 (0%)
Query 39 LGLRVAVSGGGCSGYKYSFAVVSLEEAERDGDLIFRLSPEVACEEKTSL 87
L LR+ V GGCSG Y+ + A D I + C+ K+ L
Sbjct 93 LCLRIGVKQGGCSGMSYTMDFENRANARPDDSTIEYQGFTIVCDPKSML 141
> At5g03900
Length=757
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 0/19 (0%)
Query 41 LRVAVSGGGCSGYKYSFAV 59
LR+ V GGCSG++Y F +
Sbjct 673 LRLGVETGGCSGFQYKFEL 691
> At1g73740
Length=431
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 19/118 (16%)
Query 40 GLRVAVSGGGCSGYKYSFAVV--SLEEAERDGDLIFRLSP---EVACEEKTSLEDGTISS 94
GLRV +S GG +G+ S + L+ A+ ++F P E + TIS+
Sbjct 52 GLRVVISAGGTAGHISSALAIGDELKSADPLARILFIGFPNSMESTTVPSAGFDFSTIST 111
Query 95 TSSASNDWFVCFHPSALRLVESGSFVAFESSLGGSSF----VLKKNKKASTTCPGGRS 148
S+S+ F+CF SF+ F L S+F +L++ K GG +
Sbjct 112 VGSSSSRPFLCF----------TSFLKFPLRLIQSTFESYKILRELKPQIVIGTGGHA 159
> Hs6912310
Length=917
Score = 27.7 bits (60), Expect = 8.5, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query 50 CSGYKYSFAVVSLEEAERDGDLIFRLSPEVACEEKTSLEDGTISSTSSASNDWFVCFHPS 109
CSG KY+F V+ ++ DG + L T ED T SS H
Sbjct 386 CSGIKYAFQVIGELHSQLDGSEVLLL---------TDGEDNTASSCIDEVKQSGAIVHFI 436
Query 110 ALRLVESGSFVAFESSLGGSSF 131
AL + + GGS F
Sbjct 437 ALGRAADEAVIEMSKITGGSHF 458
> Hs20538007
Length=919
Score = 27.7 bits (60), Expect = 8.7, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query 50 CSGYKYSFAVVSLEEAERDGDLIFRLSPEVACEEKTSLEDGTISSTSSASNDWFVCFHPS 109
CSG KY+F V+ ++ DG + L T ED T SS H
Sbjct 386 CSGIKYAFQVIGELHSQLDGSEVLLL---------TDGEDNTASSCIDEVKQSGAIVHFI 436
Query 110 ALRLVESGSFVAFESSLGGSSF 131
AL + + GGS F
Sbjct 437 ALGRAADEAVIEMSKITGGSHF 458
Lambda K H
0.313 0.129 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1852391706
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40