bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_1018_orf2 Length=104 Score E Sequences producing significant alignments: (Bits) Value Hs4557741 49.3 2e-06 CE29339 41.2 4e-04 7302979 39.7 0.001 SPCC1235.09 29.3 2.0 YOR269w 28.5 3.3 Hs4557727 27.7 4.7 > Hs4557741 Length=410 Score = 49.3 bits (116), Expect = 2e-06, Method: Composition-based stats. Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 16/95 (16%) Query 2 MALRARQEQQLHLAIALYLESK-FPEAYRVFEREAHVDFSAATALTHGSEKFDSE---TL 57 M L RQ +L+ AIA YL S + EAY VF++EA +D + E+ D + L Sbjct 1 MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDVN---------EELDKKYAGLL 51 Query 58 PKRWGATARLQARVTVLQNQLQQQGQQLKLFTSAA 92 K+W + RLQ +V L+++L + ++ FTS Sbjct 52 EKKWTSVIRLQKKVMELESKLNEAKEE---FTSGG 83 > CE29339 Length=404 Score = 41.2 bits (95), Expect = 4e-04, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 49/85 (57%), Gaps = 9/85 (10%) Query 2 MALRARQEQQLHLAIALYLESK-FPEAYRVFEREAHVDFSAATALTHGSEKFDSETLPKR 60 M+L RQ+++++ AIA Y+++ + E++ VF +E ++L+ K L K+ Sbjct 1 MSLSERQKEEINRAIAEYMQNNGYSESFSVFLKE--------SSLSENDIKPLGGILEKK 52 Query 61 WGATARLQARVTVLQNQLQQQGQQL 85 W RLQ +V L+++LQ+ +++ Sbjct 53 WTTVLRLQRKVNDLESKLQESQREI 77 > 7302979 Length=411 Score = 39.7 bits (91), Expect = 0.001, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 9/86 (10%) Query 1 KMALRARQEQQLHLAIALYLESK-FPEAYRVFEREAHVDFSAATALTHGSEKFDSETLPK 59 KM L RQ ++L+ AIA YL S + ++ F +EA D S T +KF L K Sbjct 2 KMVLSQRQREELNQAIADYLGSNGYADSLETFRKEA--DLS-----TEVEKKFGG-LLEK 53 Query 60 RWGATARLQARVTVLQNQLQQQGQQL 85 +W + RLQ +V L+ +L + +++ Sbjct 54 KWTSVIRLQKKVMELEAKLTEAEKEV 79 > SPCC1235.09 Length=564 Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%) Query 46 THGSEKFDSET----LPKRWGATARLQARVTVLQNQLQ 79 +H F+ ET L K+WG+T ++ A V +LQ LQ Sbjct 20 SHTKFAFERETGIQNLDKQWGSTCQVGALVEILQKGLQ 57 > YOR269w Length=494 Score = 28.5 bits (62), Expect = 3.3, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 0/34 (0%) Query 53 DSETLPKRWGATARLQARVTVLQNQLQQQGQQLK 86 D LPK+W + RLQ ++ L+ + Q+K Sbjct 81 DELLLPKKWNSIVRLQKKIIELEQNTETLVSQIK 114 > Hs4557727 Length=475 Score = 27.7 bits (60), Expect = 4.7, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 0/36 (0%) Query 18 LYLESKFPEAYRVFEREAHVDFSAATALTHGSEKFD 53 +YL+++ Y+VF + + FS + TH ++ F+ Sbjct 328 MYLKTRSQMPYKVFHYQVKIHFSGTESETHTNQAFE 363 Lambda K H 0.318 0.127 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1174332180 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40