bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_1242_orf1
Length=181
Score E
Sequences producing significant alignments: (Bits) Value
At1g80380 105 6e-23
SPAC630.09c 87.0 2e-17
YGR205w 79.7 3e-15
At4g14330 30.0 2.7
> At1g80380
Length=389
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 99/174 (56%), Gaps = 13/174 (7%)
Query 2 LERIKERNPKILLPKYDKSKMHGAGDRTEAAVLLDATD-LDVFLLEGWMLGFRRLDPQEL 60
L ++ + K+ +P+Y+KS G GDR +++ + L V L EGWMLGF+ L +
Sbjct 221 LSKLTKEGLKMKVPRYNKSAYSGRGDRADSSTWPEVEGPLSVILFEGWMLGFKPLPADVV 280
Query 61 TATAYNLPEQEQAELRTINEALKDYERLY-SFVDLWLVLKVETANWVYNWRRQQEEDTRR 119
A +L +N+ L+ Y + ++D W+V+K++ ++VY WR Q E R+
Sbjct 281 KAV--------DPQLEVVNKNLEAYYDAWDKYIDAWVVIKIQDPSYVYRWRLQAEIAMRQ 332
Query 120 NTGSGLTADEVDGFVNRFMPLYAVYLPGLYANPPLSGKDPGGRSCLLVEVTEKR 173
+ +G++ +EV+ FV+R++P Y YLP LYA P SG DP L +++ E+R
Sbjct 333 DGQAGMSDEEVNDFVSRYLPAYKAYLPTLYAEGP-SGSDPD--RVLAIDIDEER 383
> SPAC630.09c
Length=277
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 9/172 (5%)
Query 5 IKERNPKILLPKYDKSKMHGAGDRTEAAVLLDAT--DLDVFLLEGWMLGFRRLDPQELTA 62
+K + ++ +P YDKSK G GDR + + A + EGWM+GF LD L+
Sbjct 106 VKGSDEEVSIPFYDKSKFGGYGDRGDESQWKKANPKTTTYVIFEGWMVGFEPLDSCMLSV 165
Query 63 TAYNLPEQE-QAELRTINEALKDYERLYSFVDLWLVLKVETANWVYNWRRQQEEDTRRNT 121
A + Q + L +N L DY+ ++ +D + L+ + N+VY WR QQE +
Sbjct 166 RARSTRWQNIEGSLLWVNRKLADYQPIFQKIDSLVELEAQEINYVYRWRLQQEHALKARI 225
Query 122 GSGLTADEVDGFVNRFMPLYAVYLPGLYANPPLSGKDPGGRSCLLVEVTEKR 173
G++ +EV FVN +MP Y YL LS K CL + + E R
Sbjct 226 HKGMSDEEVIEFVNHYMPQYVFYL------GTLSNKVHLNPHCLEIILDENR 271
> YGR205w
Length=290
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query 12 ILLPKYDKSKMHGAGDRTEAAVLLDATDLDVFLLEGWMLGFRRLDPQELTATAYNLPEQE 71
++LPKYDKS+ G GDR + +D+F+LEGW LGF + L N +
Sbjct 126 VVLPKYDKSQFKGEGDRCPTGQKIKLP-VDIFILEGWFLGFNPI----LQGIENN--DLL 178
Query 72 QAELRTINEALKDYERLY----SFVDLWLVLKVETANWVYNWRRQQEEDTRRNTGSGLTA 127
++ +N L Y L L +V + N VY WR QQE + G G+T
Sbjct 179 TGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTD 238
Query 128 DEVDGFVNRFMPLYAVYLPGLYANPPLSGKDPGGRSCLLVEVTEKRTIKSA 178
++V FV+R+MP Y +YL N + + G + L + + R + S
Sbjct 239 EQVHAFVDRYMPSYKLYL-----NDFVRSESLGSIATLTLGIDSNRNVYST 284
> At4g14330
Length=959
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 0/50 (0%)
Query 110 RRQQEEDTRRNTGSGLTADEVDGFVNRFMPLYAVYLPGLYANPPLSGKDP 159
RR +E + +G + DE GF R LY+ PG+ + L DP
Sbjct 502 RRLEEIEVEFRRSNGGSVDETSGFAKRLRSLYSDDDPGMVKSMDLDMGDP 551
Lambda K H
0.318 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2842629034
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40