bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_1537_orf1
Length=92
Score E
Sequences producing significant alignments: (Bits) Value
SPAC222.14c 41.6 3e-04
At5g45160 31.6 0.39
YOR165w 28.9 2.5
At2g25090 28.1 3.9
At1g61580 27.7 5.9
SPCC1450.10c 26.9 9.4
7291891 26.9 9.8
> SPAC222.14c
Length=762
Score = 41.6 bits (96), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 0/49 (0%)
Query 44 MVTLSGGDLVQVIDYDGEMTADLEKWMRDQGLADVGFSFNVITILGSQS 92
M T S Q++D + +L K+M+ GL D GF+++V+ +LGSQS
Sbjct 1 MSTASNRVSTQIVDEHKQFNNELPKFMQSVGLLDAGFNYHVVAVLGSQS 49
> At5g45160
Length=834
Score = 31.6 bits (70), Expect = 0.39, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query 54 QVIDYDGEMTAD-LEKWMRDQGLADVGFSFNVITILGSQS 92
Q+ID +GE L+ +++ L+D G S+ V+ I+G QS
Sbjct 11 QLIDGNGEFNVKGLDNFVKKTKLSDCGLSYAVVAIMGPQS 50
> YOR165w
Length=776
Score = 28.9 bits (63), Expect = 2.5, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query 53 VQVIDYDGEM-TADLEKWMRDQGLADVGFSFNVITILGSQS 92
+Q+ID + E + L+ + + G DVG ++VI++ GSQS
Sbjct 7 IQLIDEEKEFHQSALQYFQQCIGNRDVGLDYHVISVFGSQS 47
> At2g25090
Length=469
Score = 28.1 bits (61), Expect = 3.9, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 0/37 (0%)
Query 44 MVTLSGGDLVQVIDYDGEMTADLEKWMRDQGLADVGF 80
M ++GG+L ++ID DG++ DL + Q ++ V F
Sbjct 93 MEYVNGGELFEMIDRDGKLPEDLARKYFQQLISAVDF 129
> At1g61580
Length=390
Score = 27.7 bits (60), Expect = 5.9, Method: Composition-based stats.
Identities = 8/40 (20%), Positives = 25/40 (62%), Gaps = 0/40 (0%)
Query 19 AIVLAVVHLRREQQQQLRRKQQRVKMVTLSGGDLVQVIDY 58
+++ + H + + + L++K+ + + ++GGD+ + +DY
Sbjct 158 SVIRVLAHTQIRKMKGLKQKKAHLNEIQINGGDIAKKVDY 197
> SPCC1450.10c
Length=538
Score = 26.9 bits (58), Expect = 9.4, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query 11 CSGCPTVAAIVLAVVHLRREQQQQLR-RKQQRVKMVTLS 48
CSGC T A VL + +E + L RK Q + V+LS
Sbjct 67 CSGCITSAETVLVNLQSYQEVLKHLESRKSQEILYVSLS 105
> 7291891
Length=589
Score = 26.9 bits (58), Expect = 9.8, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 0/43 (0%)
Query 16 TVAAIVLAVVHLRREQQQQLRRKQQRVKMVTLSGGDLVQVIDY 58
+ + IV V +L ++QQL+ + ++ L+GG+ V V+ +
Sbjct 529 SFSLIVAGVYYLNSRREQQLQESKTSAELEALNGGENVIVVHH 571
Lambda K H
0.321 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1171209254
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40