bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_1584_orf1
Length=149
Score E
Sequences producing significant alignments: (Bits) Value
At2g44180 41.6 6e-04
At3g59990 38.9 0.004
7297553 33.5 0.17
Hs9910182 30.4 1.2
SPBC14C8.03 29.6 2.4
Hs4757758 27.7 9.2
> At2g44180
Length=431
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%), Gaps = 0/27 (0%)
Query 113 QQTVPPTKTMQQLFPAGDFPKGEVQLY 139
QQT PP+ + +LFP+GDFP+GE+Q Y
Sbjct 69 QQTDPPSIPVLELFPSGDFPQGEIQQY 95
> At3g59990
Length=435
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 0/37 (0%)
Query 113 QQTVPPTKTMQQLFPAGDFPKGEVQLYASPPHDAEAR 149
QQT PP+ + +LFP+G+FP+GE+Q Y E R
Sbjct 77 QQTDPPSIPVVELFPSGEFPEGEIQEYKDETTSEEKR 113
> 7297553
Length=448
Score = 33.5 bits (75), Expect = 0.17, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query 114 QTVPPTKTMQQLFPAGDFPKGEVQLYASP---PHDAEAR 149
QT PPT + +L+P G+FP+GE+ + +P P D A+
Sbjct 79 QTDPPTIPIAKLYPDGNFPEGEIVEHPTPKDMPDDRTAK 117
> Hs9910182
Length=371
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query 102 CLGSWPERKPSQQTVPPTKTMQQLFPAGDFPKGEVQLYASPP 143
C WP+R P ++T K Q+FP+G P + SPP
Sbjct 287 CCSGWPQRHPKRKTQKHLKRKSQMFPSG--PVSSCRRVHSPP 326
> SPBC14C8.03
Length=426
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 0/30 (0%)
Query 111 PSQQTVPPTKTMQQLFPAGDFPKGEVQLYA 140
P +QT PPT + ++F +P GEV YA
Sbjct 62 PQEQTNPPTVGLSKIFVNKKYPVGEVCDYA 91
> Hs4757758
Length=140
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query 54 AAAAAGGQGAAAAAKKKKKKKKKSAAAAAAAAAKTLGFEPAQDNSALRCLGSWPERKPSQ 113
+ AAGG+G + + + S+AA + + G + + L+ +G P K +
Sbjct 13 TSIAAGGEGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTKK 72
Query 114 QTVPPTKTMQQLFPAGDFPKGEVQLYAS 141
V T+T+Q L DF K ++L AS
Sbjct 73 WAVERTRTIQGLI---DFIKKFLKLVAS 97
Lambda K H
0.304 0.120 0.333
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1858150626
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40