bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_2376_orf1 Length=87 Score E Sequences producing significant alignments: (Bits) Value Hs14249592 37.0 0.010 Hs6005786 37.0 0.010 SPBC32H8.03 35.8 0.021 At5g20520 31.2 0.53 7296827 28.9 2.7 At5g04460 28.5 3.2 > Hs14249592 Length=201 Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust. Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 0/32 (0%) Query 56 VFVMGHSMGGAVAIDLAKRRGNELAGLVVENT 87 +F+ G S+GGAVAI LA + ++ ++VENT Sbjct 51 IFLFGRSLGGAVAIHLASENSHRISAIMVENT 82 > Hs6005786 Length=313 Score = 37.0 bits (84), Expect = 0.010, Method: Composition-based stats. Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 0/29 (0%) Query 56 VFVMGHSMGGAVAIDLAKRRGNELAGLVV 84 VF++GHSMGGA+AI A R AG+V+ Sbjct 126 VFLLGHSMGGAIAILTAAERPGHFAGMVL 154 > SPBC32H8.03 Length=299 Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 19/80 (23%) Query 26 ANNNNANAISKQQKGKSSSSSSSS------------------SSKSNFVFVMGHSMGGAV 67 A N N IS + GKS+ S S + SK+ V V G S+GGAV Sbjct 115 ALNMNVFIISYRGYGKSTGSPSEAGLKIDSQTALEYLMEHPICSKTKIV-VYGQSIGGAV 173 Query 68 AIDLAKRRGNELAGLVVENT 87 AI L + + ++ L++ENT Sbjct 174 AIALTAKNQDRISALILENT 193 > At5g20520 Length=340 Score = 31.2 bits (69), Expect = 0.53, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 0/42 (0%) Query 46 SSSSSSKSNFVFVMGHSMGGAVAIDLAKRRGNELAGLVVENT 87 S + ++ + V G S+GGAV L K ++++ L++ENT Sbjct 170 SGRTDIDTSRIVVFGRSLGGAVGAVLTKNNPDKVSALILENT 211 > 7296827 Length=271 Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query 8 APQVLHERS-SSSSNSNSNANNNNANAISKQQKGKSSSSSSSSSS 51 A ++ H RS S SNSN NN + N S + K SS++++S++ Sbjct 92 ATRISHRRSIPSQQTSNSNENNQSTNQTSNSRNQKESSTAATSAA 136 > At5g04460 Length=831 Score = 28.5 bits (62), Expect = 3.2, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query 7 GAPQVLHERSSSSSNSNSNANNNN-ANAISKQQKGKSSSSSSSSSSKSN 54 G ++HE +S++ N NSN + N A AI+ + + SS+SS + N Sbjct 442 GRENIVHENTSNTDNDNSNTSTNALAIAITAGNSQRVTDESSTSSRQGN 490 Lambda K H 0.300 0.115 0.294 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1187582654 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40