bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_2567_orf2 Length=132 Score E Sequences producing significant alignments: (Bits) Value SPAC16.03c 89.0 2e-18 At4g22930 81.3 5e-16 YLR420w 74.3 5e-14 > SPAC16.03c Length=337 Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/117 (41%), Positives = 66/117 (56%), Gaps = 9/117 (7%) Query 1 LQVVREGHPQFFLGSDSAPHPRHKKDSYPPAAGVFTQPFLLAYLADTFARAGCLDKLQSF 60 ++ +P+FF GSDSAPHPR K PPAAGVFTQPF +YLA+ F + G LD L+ F Sbjct 225 IEAATSKNPKFFFGSDSAPHPRSSKLKTPPAAGVFTQPFAASYLAEVFDKEGRLDALKDF 284 Query 61 ACENAAAFFGLPKKELVEGEDCVVLEQTPCRIPNVVCGAEGTSTDVVPFLAGHELGY 117 AC F+ +P L E +VL++ R+P E + D+VPF L + Sbjct 285 ACIFGRKFYCIP---LDFKESNIVLKKESFRVP------ESVANDLVPFHPNEVLQW 332 > At4g22930 Length=377 Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 8/117 (6%) Query 1 LQVVREGHPQFFLGSDSAPHPRHKKDSYPPAAGVFTQPFLLAYLADTFARAGCLDKLQSF 60 ++ V G +FFLG+DSAPH R +K+S AG+++ P L+ A F AG LDKL++F Sbjct 265 VKAVTSGSKKFFLGTDSAPHERSRKESSCGCAGIYSAPIALSLYAKVFDEAGALDKLEAF 324 Query 61 ACENAAAFFGLPKKELVEGEDCVVLEQTPCRIPNVVCGAEGTSTDVVPFLAGHELGY 117 N F+GLP+ + L+++P ++P+V G ++VP AG L + Sbjct 325 TSFNGPDFYGLPR-----NSSKITLKKSPWKVPDVFNFPFG---EIVPMFAGETLQW 373 > YLR420w Length=364 Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 4/118 (3%) Query 7 GHPQFFLGSDSAPHPRHKKDSYPPA-AGVFTQPFLLAYLADTFARAGCLDKLQSFACENA 65 G P FF GSDSAPHP K +Y AGV++Q F + Y+A F L+ L+ F + Sbjct 249 GKPYFFFGSDSAPHPVQNKANYEGVCAGVYSQSFAIPYIAQVFEEQNALENLKGFVSDFG 308 Query 66 AAFFGLPKKELVEGEDCVVLEQTPCRIPNVVCGAEGTSTDVVPFLAGHELGYTLKVVP 123 +F+ + E+ + ++ ++ IP V+ ++G ++PF AG +L ++++ P Sbjct 309 ISFYEVKDSEVASSDKAILFKKEQV-IPQVI--SDGKDISIIPFKAGDKLSWSVRWEP 363 Lambda K H 0.322 0.138 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1319765976 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40