bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_2937_orf1 Length=200 Score E Sequences producing significant alignments: (Bits) Value CE28063 57.0 3e-08 Hs14042923 45.4 7e-05 7298971 30.4 2.6 > CE28063 Length=808 Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 58/194 (29%) Query 7 LSASVNEKIRAILFSSVKKVWFYSLFTWFIFESTGMPVVYVPTAASSLLALLPILPPEVI 66 ++ ++ I + S K FY L+T+F+ + +V+VP+ A+++ A +PI+PP ++ Sbjct 644 ITVAIEHAIFGVFVLSAKMAVFYGLYTYFVHSLFDLNIVFVPSMAATVFAAIPIMPPYIV 703 Query 67 SLLPAVALWLHSDAAAAAAAAAGGGPPAEAAAAAAAAAAAAAPGGAGTPAAAAAAAAAAA 126 ++ V LWL E AAA A+ AP Sbjct 704 AIFGIVELWL---------------VRGEGAAALVFTVASFAP----------------- 731 Query 127 AGGWGHWFAAPHRLAALAVLAANALVWWNVTTCIYREIPDASPWLVGLSAALGLSTLGLK 186 V+ A+A YRE+ + P++ GL+ G+ LGL+ Sbjct 732 ------------------VMFADA--------TFYREVKGSHPYVTGLAIIGGMYWLGLQ 765 Query 187 GIILGPVLATVPLI 200 G I+GP++ + L+ Sbjct 766 GAIIGPIVLCLCLV 779 > Hs14042923 Length=911 Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 0/59 (0%) Query 3 SSAILSASVNEKIRAILFSSVKKVWFYSLFTWFIFESTGMPVVYVPTAASSLLALLPIL 61 SS I+ SV E IR + +S+K FY L+TW G+ +V++P+A +++L +P L Sbjct 695 SSNIIGQSVEEAIRGVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFL 753 Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query 141 AALAVLAANALVWWNVTTCIYREIPDA-SPWLVGLSAALGLSTLGLKGIILGPVLATV 197 A+ +L + L + V T IY +I P+L GL+ A G LGL+G I+GP+L + Sbjct 775 KAILLLIFHLLPTYFVDTAIYSDISGGGHPYLTGLAVAGGAYYLGLEGAIIGPILLCI 832 > 7298971 Length=837 Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 0/62 (0%) Query 133 WFAAPHRLAALAVLAANALVWWNVTTCIYREIPDASPWLVGLSAALGLSTLGLKGIILGP 192 W A A L + V + T IY ++ P+L GL+ A G+ +G +G I GP Sbjct 745 WLAQDRFYAGLILFLLQFFVPSSFETAIYADLKGGHPYLNGLAIAGGMYWIGWQGAIFGP 804 Query 193 VL 194 ++ Sbjct 805 LM 806 Lambda K H 0.319 0.129 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 3479363422 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40