bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_3073_orf1 Length=205 Score E Sequences producing significant alignments: (Bits) Value At5g19950 40.0 0.004 CE13353_2 40.0 0.004 At5g17970 31.6 1.2 CE12292 31.2 1.5 YPR163c 31.2 1.5 Hs13376427 29.3 5.3 YDR052c 29.3 6.3 > At5g19950 Length=463 Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 26/135 (19%) Query 70 KSMQAPPEVAACAAIDGPAENVKSTATNYTLRRPLLCMVLSFQDVRLPTKDVEEDFSDGA 129 KS+ P E+ C+ + GP VL VR T+ E+F + Sbjct 73 KSLPDPTELRRCSHLQGPK-------------------VLQISYVRDVTRSSAEEFVGSS 113 Query 130 QGIKGNQRRLLSLKLTDGRGTSFTAVELRFCQQLDIVPLLPGVKLLLLPGLVFYRGMALL 189 G +R+L LTDG+ T +A+E ++ + PG K+ L V G+ L Sbjct 114 TG-----KRVLKFALTDGK-TEISALEYSHIPTIN-NDVTPGTKVRLENKAVIRDGLVCL 166 Query 190 TPRYLQNLAGGAKQL 204 TP+ + L G + L Sbjct 167 TPKEVTVLGGYVQSL 181 > CE13353_2 Length=389 Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 24/141 (17%) Query 81 CAAIDGPA------ENVKSTATNYTLRRPLLCMVLSFQDVRLP----------------T 118 C++I+ + ++ T L+ P++C + F DV P Sbjct 73 CSSIESSSFPVFGNHGIEETVAKQNLQGPIVCQINGFIDVGSPYYQQYCSMSGNGQKEDQ 132 Query 119 KDVEEDFSDGAQGIKGNQRRLLSLKLTDGRGTSFTAVELRFCQQLDIVPLLPGVKLLLLP 178 E+ F + RLL L L DG T+ A+E C QL + PG K+L++P Sbjct 133 SGFEKVFHEKDNDTDQKPSRLLKLTLFDGE-TTLKAIEFWKCPQLSL-HYKPGTKILIVP 190 Query 179 GLVFYRGMALLTPRYLQNLAG 199 +G LL + L G Sbjct 191 PCAIRKGTFLLKRNNCKVLGG 211 > At5g17970 Length=780 Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 12/72 (16%) Query 102 RPLLCMVLSFQDVRLPTKDVEEDFSDGAQGIKGNQRRLLS--LKLTD----GRGTSFTAV 155 RP + L+ +D +L E +G Q +K +R LS K+ D R T+ + Sbjct 612 RPEFLVELTMRDSKL------EKLWEGIQPLKSLKRMDLSASTKIKDIPNLSRATNLEKL 665 Query 156 ELRFCQQLDIVP 167 LRFC+ L IVP Sbjct 666 YLRFCKNLVIVP 677 > CE12292 Length=926 Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 4/94 (4%) Query 112 QDVRLPTKDVEEDFSDGAQGIKGNQRR-LLSLKLTDGRGTSFTAVELRFCQQLDIVPLLP 170 ++ R KDV D + Q ++R +L ++LTDG T A+EL + D +LP Sbjct 125 EENRDKEKDVASDRMNHTQTKNAIKKRGMLKIELTDGVNT-LKAIELD--EVFDEKIMLP 181 Query 171 GVKLLLLPGLVFYRGMALLTPRYLQNLAGGAKQL 204 G K++L + RG LL L G + L Sbjct 182 GAKIILTGKVKCRRGNLLLDKSNCAFLGGRVESL 215 > YPR163c Length=436 Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Query 15 VPWALDFTPEGFAAIEQSGASSPAAVKDYVLSADLR 50 +PW D TPEG A + G P AV++ VL +LR Sbjct 108 IPW--DITPEGVQAWVEDGLVKPEAVEEVVLPKNLR 141 > Hs13376427 Length=625 Score = 29.3 bits (64), Expect = 5.3, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 10/66 (15%) Query 138 RLLSLKLTDG----RGTSFTAVELRFCQQLDIVPLLPGVKLLLLPGLVFYRGMALLTPRY 193 R+L L+LTDG +G + + + L PG K+L+ + F G+ LL P Sbjct 133 RMLMLQLTDGIVQIQGMEYQPIPILHSD------LPPGTKILIYGNISFRLGVLLLKPEN 186 Query 194 LQNLAG 199 ++ L G Sbjct 187 VKVLGG 192 > YDR052c Length=704 Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 11/78 (14%) Query 26 FAAIEQSGASSPAAVKDYVLSADLRRLHLAPHPADPTNFSALHSKSMQAPPEV---AACA 82 F A+++ A S KD + + R P NF + +KS+ A +V Sbjct 568 FNALKKDEAPSKETGKDSAVHLETNR--------KPQNFPKVATKSVSADSKVHNDIKIT 619 Query 83 AIDGPAENVKSTATNYTL 100 + P + KST+TN TL Sbjct 620 TTESPTASKKSTSTNVTL 637 Lambda K H 0.321 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 3658712052 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40