bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_3622_orf1
Length=153
Score E
Sequences producing significant alignments: (Bits) Value
At4g02720 54.3 8e-08
Hs13375676 48.1 6e-06
Hs20556582 47.8 9e-06
7301548 45.1 6e-05
> At4g02720
Length=420
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 29/32 (90%), Gaps = 0/32 (0%)
Query 122 AQKNVDYGFALRPGEGEAIAQFVQEGKRIPRR 153
A+ ++ YG ALRPGEG+AIAQ+VQ+GKRIPRR
Sbjct 293 AEGHISYGGALRPGEGDAIAQYVQQGKRIPRR 324
> Hs13375676
Length=415
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%), Gaps = 0/46 (0%)
Query 108 ELVGPKPMEVTNKLAQKNVDYGFALRPGEGEAIAQFVQEGKRIPRR 153
+L+GP+ + K ++YG AL PGEG A+A++V+ GKRIPRR
Sbjct 289 DLIGPEAPKTLTSQDDKPLNYGHALLPGEGAAMAEYVKAGKRIPRR 334
> Hs20556582
Length=362
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%), Gaps = 0/46 (0%)
Query 108 ELVGPKPMEVTNKLAQKNVDYGFALRPGEGEAIAQFVQEGKRIPRR 153
+L+GP+ + +K + YG AL PGEG A+A++V+ GKRIPRR
Sbjct 236 DLIGPEAPIIHTSQDEKPLKYGHALLPGEGAAMAEYVKAGKRIPRR 281
> 7301548
Length=463
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query 104 SSEDELVGPKPMEVTNKLAQKNVDYGFALRPGEGEAIAQFVQEGKRIPRR 153
S DE VGP + L QK D+G AL PGEG A+A ++ EGKRIPRR
Sbjct 336 SHNDEDVGPS-LRPGGSLNQK--DFGKALLPGEGAAMAAYIAEGKRIPRR 382
Lambda K H
0.312 0.124 0.335
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1961355924
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40