bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_3648_orf2 Length=226 Score E Sequences producing significant alignments: (Bits) Value 7292866 41.2 0.002 At2g27280 35.8 0.070 Hs14149807 30.0 3.9 > 7292866 Length=335 Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 2/65 (3%) Query 1 RQMKKEREREGAV--PEEVFVTSAYKARLEERRKIMEELERQDERDRQSAADKQKDLSSF 58 RQ++K+RE EG + ++ +VT+AY+ +LE R++ E+ +R + + KQKDL F Sbjct 76 RQVQKDREAEGEMYKDKDTYVTAAYRKKLESIRQMQEQEQRDEYLEAIGDVTKQKDLDGF 135 Query 59 HSYLL 63 + +L Sbjct 136 YRHLY 140 > At2g27280 Length=764 Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 2/69 (2%) Query 1 RQMKKEREREGAV--PEEVFVTSAYKARLEERRKIMEELERQDERDRQSAADKQKDLSSF 58 R++ KERE++ + +E FVT AYK +LEE++K + E ++ R+ + K+KDLS F Sbjct 118 RKLAKEREKDEHLFSDKEKFVTGAYKRKLEEQKKWLAEERLRELREERDDVTKKKDLSDF 177 Query 59 HSYLLKSGA 67 + + K+ A Sbjct 178 YFNIGKNVA 186 > Hs14149807 Length=558 Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%) Query 1 RQMKKERERE-GAVPE-EVFVTSAYKARLEERRKIMEELERQDERDRQSAADKQKDLSSF 58 +++++ERE E G + E FVTSAYK +L+ER + E +R + KQKDLS F Sbjct 124 KKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGF 183 Query 59 HSYLL 63 + +LL Sbjct 184 YRHLL 188 Lambda K H 0.303 0.115 0.299 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 4312910206 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40