bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_3648_orf2
Length=226
Score E
Sequences producing significant alignments: (Bits) Value
7292866 41.2 0.002
At2g27280 35.8 0.070
Hs14149807 30.0 3.9
> 7292866
Length=335
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query 1 RQMKKEREREGAV--PEEVFVTSAYKARLEERRKIMEELERQDERDRQSAADKQKDLSSF 58
RQ++K+RE EG + ++ +VT+AY+ +LE R++ E+ +R + + KQKDL F
Sbjct 76 RQVQKDREAEGEMYKDKDTYVTAAYRKKLESIRQMQEQEQRDEYLEAIGDVTKQKDLDGF 135
Query 59 HSYLL 63
+ +L
Sbjct 136 YRHLY 140
> At2g27280
Length=764
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query 1 RQMKKEREREGAV--PEEVFVTSAYKARLEERRKIMEELERQDERDRQSAADKQKDLSSF 58
R++ KERE++ + +E FVT AYK +LEE++K + E ++ R+ + K+KDLS F
Sbjct 118 RKLAKEREKDEHLFSDKEKFVTGAYKRKLEEQKKWLAEERLRELREERDDVTKKKDLSDF 177
Query 59 HSYLLKSGA 67
+ + K+ A
Sbjct 178 YFNIGKNVA 186
> Hs14149807
Length=558
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query 1 RQMKKERERE-GAVPE-EVFVTSAYKARLEERRKIMEELERQDERDRQSAADKQKDLSSF 58
+++++ERE E G + E FVTSAYK +L+ER + E +R + KQKDLS F
Sbjct 124 KKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGF 183
Query 59 HSYLL 63
+ +LL
Sbjct 184 YRHLL 188
Lambda K H
0.303 0.115 0.299
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 4312910206
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40