bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_4384_orf1 Length=78 Score E Sequences producing significant alignments: (Bits) Value At1g78800 61.6 3e-10 SPBC32H8.14 57.8 4e-09 YGL065c 51.6 3e-07 7292312 44.3 6e-05 Hs14861836 43.1 1e-04 CE02609_1 41.6 4e-04 At5g06310 28.9 2.2 SPBC365.14c 27.3 7.5 > At1g78800 Length=405 Score = 61.6 bits (148), Expect = 3e-10, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 2/72 (2%) Query 8 LNIVVFGSFLPHSILRHFRVFCSVLRMLYLVLTAIMTGHVGYDLVFNDQVAVVNPLLRLV 67 + V+GSFLP I C+ LR L++ L ++ G +D+V DQV+VV PLL+L Sbjct 62 FQVTVYGSFLPRHIFYRLHAVCAYLRCLFVAL-CVLLGWSSFDVVLADQVSVVVPLLKLK 120 Query 68 -GKKVIFYGHFP 78 KV+FY HFP Sbjct 121 RSSKVVFYCHFP 132 > SPBC32H8.14 Length=511 Score = 57.8 bits (138), Expect = 4e-09, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query 8 LNIVVFGSFLPHSILRHFRVFCSVLRMLYLVLTAIMTGHVGYDLVFNDQVAVVNPLLRLV 67 + + V+G +LP SI +FCS LR +YL + ++T ++ +D + DQ++ P L L Sbjct 70 IKVKVYGDWLPSSIFGRLSIFCSSLRQVYLTMI-LLTNYMHFDAIIVDQLSTCVPFLLLA 128 Query 68 GKKVIFYGHFP 78 + ++FY HFP Sbjct 129 SQMILFYCHFP 139 > YGL065c Length=503 Score = 51.6 bits (122), Expect = 3e-07, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query 4 KTSRLNIVVFGSFLPHSILRHFRVFCSVLRMLYLVLTAIMTGHV-GYDLVFNDQVAVVNP 62 K +L + V+G FLP + L F + + +R LYLV+ I+ V Y L+ DQ++ P Sbjct 56 KNGQLKVEVYGDFLPTNFLGRFFIVFATIRQLYLVIQLILQKKVNAYQLIIIDQLSTCIP 115 Query 63 LLRLVGK-KVIFYGHFP 78 LL + ++FY HFP Sbjct 116 LLHIFSSATLMFYCHFP 132 > 7292312 Length=424 Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query 12 VFGSFLPHSILRHFRVFCSVLRMLYLVLTA--IMTGHVGYDLVFNDQVAVVNPLLRLVG- 68 V G +LP + F C+ LRMLY + A M D+V D ++V P+LR Sbjct 59 VVGDWLPRGLFGRFYAICAYLRMLYAAIYASFFMPQREQVDVVVCDLISVCIPVLRFAPH 118 Query 69 -KKVIFYGHFP 78 KV+FY HFP Sbjct 119 RPKVLFYCHFP 129 > Hs14861836 Length=416 Score = 43.1 bits (100), Expect = 1e-04, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%) Query 29 CSVLRMLYLVLTAIMTGHVGYDLVFNDQVAVVNPLLRLV--GKKVIFYGHFP 78 C+ +RM++L L + +D+V DQV+ P+ RL KK++FY HFP Sbjct 89 CAYVRMVFLALYVLFLADEEFDVVVCDQVSACIPVFRLARRRKKILFYCHFP 140 > CE02609_1 Length=384 Score = 41.6 bits (96), Expect = 4e-04, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Query 2 LQKTSRLNIVVFGSFLPHSILRHFRVFCSVLRMLYLVLTAIMTGHVGYDLVFNDQVAVVN 61 Q+T L+I ++P SI C+ L+M+ L I+ H D++ +D V+ Sbjct 47 FQETLDLDICTVVPWIPRSIFGKGHALCAYLKMIIAALY-IVIYHKDTDVILSDSVSASQ 105 Query 62 PLLRLVGK-KVIFYGHFP 78 +LR K K++FY HFP Sbjct 106 FVLRHFSKAKLVFYCHFP 123 > At5g06310 Length=463 Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats. Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 0/34 (0%) Query 2 LQKTSRLNIVVFGSFLPHSILRHFRVFCSVLRML 35 L K+ RL + V LP +LR F F SVLR++ Sbjct 200 LVKSERLPLCVEPEMLPTYMLRKFPTFGSVLRII 233 > SPBC365.14c Length=355 Score = 27.3 bits (59), Expect = 7.5, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%) Query 40 TAIMTGHVGYDLVF-----NDQVAVVNPLLRLVGKKVIFY 74 T ++ GYD+V N +V V+ + +L GKKVIF+ Sbjct 22 TCVVLLEKGYDVVIVDNLCNSRVEAVHRIEKLTGKKVIFH 61 Lambda K H 0.336 0.149 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1171925608 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40