bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_4515_orf1
Length=50
Score E
Sequences producing significant alignments: (Bits) Value
Hs14150013 90.9 5e-19
Hs22040945 70.1 1e-12
CE19378 33.5 0.088
At5g13240 33.1 0.11
SPAC31G5.12c 31.6 0.33
YDR005c 28.5 2.8
ECU11g2080i 27.3 6.1
ECU10g0060 27.3 6.1
> Hs14150013
Length=256
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/42 (100%), Positives = 42/42 (100%), Gaps = 0/42 (0%)
Query 3 GSLWSFNYFFYNKRLKRIVFFSCRSISGSTYTPSEAGNELDM 44
GSLWSFNYFFYNKRLKRIVFFSCRSISGSTYTPSEAGNELDM
Sbjct 181 GSLWSFNYFFYNKRLKRIVFFSCRSISGSTYTPSEAGNELDM 222
> Hs22040945
Length=149
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/40 (82%), Positives = 36/40 (90%), Gaps = 0/40 (0%)
Query 4 SLWSFNYFFYNKRLKRIVFFSCRSISGSTYTPSEAGNELD 43
+LWSFNYFFYNK LK+IVFFS RSIS ST TPSEAGNE+D
Sbjct 85 TLWSFNYFFYNKGLKQIVFFSHRSISSSTCTPSEAGNEMD 124
> CE19378
Length=245
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 0/35 (0%)
Query 3 GSLWSFNYFFYNKRLKRIVFFSCRSISGSTYTPSE 37
G +W+ + FYNK LKR V + R +S T E
Sbjct 196 GCIWALAFIFYNKGLKRFVLLTIRCLSKQADTSIE 230
> At5g13240
Length=283
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query 3 GSLWSFNYFFYNKRLKRIV--FFSCRS 27
G++WSF + FYN++LKR+ FSC S
Sbjct 231 GAIWSFCFLFYNRKLKRVAGFRFSCTS 257
> SPAC31G5.12c
Length=215
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 0/39 (0%)
Query 5 LWSFNYFFYNKRLKRIVFFSCRSISGSTYTPSEAGNELD 43
+W +YFF+NK +KR+++ S + + GN+ D
Sbjct 152 IWGMSYFFFNKNMKRMLYLSLHGLGKEVSGRNRYGNDDD 190
> YDR005c
Length=395
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query 2 PGSLWSFNYFFYNKRLKRI--VFFSCRSISGST 32
PG LW+ F YN++ KR+ ++ C ++ ST
Sbjct 315 PGYLWNLIGFLYNRKRKRVAYLYLICSRLNSST 347
> ECU11g2080i
Length=283
Score = 27.3 bits (59), Expect = 6.1, Method: Composition-based stats.
Identities = 8/20 (40%), Positives = 15/20 (75%), Gaps = 0/20 (0%)
Query 5 LWSFNYFFYNKRLKRIVFFS 24
LW F++ F+NK+ +R+V +
Sbjct 258 LWYFSFLFFNKKQRRVVMLN 277
> ECU10g0060
Length=283
Score = 27.3 bits (59), Expect = 6.1, Method: Composition-based stats.
Identities = 8/20 (40%), Positives = 15/20 (75%), Gaps = 0/20 (0%)
Query 5 LWSFNYFFYNKRLKRIVFFS 24
LW F++ F+NK+ +R+V +
Sbjct 258 LWYFSFLFFNKKQRRVVMLN 277
Lambda K H
0.319 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1164550556
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40