bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_5267_orf1 Length=75 Score E Sequences producing significant alignments: (Bits) Value At5g64270 29.3 1.7 7296186 29.3 1.9 Hs6912654 29.3 2.0 SPAC27F1.09c 28.5 3.1 At1g18950 28.1 4.6 At5g27010 27.3 8.0 > At5g64270 Length=1269 Score = 29.3 bits (64), Expect = 1.7, Method: Composition-based stats. Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Query 33 RKQGRLMKLCLN-KNGGPPAFQYALRKLSPCGRD 65 +K+ ++MKL L KNG PP + ALR+L+ R+ Sbjct 456 QKERKIMKLLLKVKNGTPPQRKTALRQLTDKARE 489 > 7296186 Length=1349 Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Query 34 KQGRLMKLCLN-KNGGPPAFQYALRKLSPCGRDY 66 K+ ++MKL L KNG PP + ALR+++ R++ Sbjct 538 KERKIMKLLLTIKNGSPPMRKSALRQITDKAREF 571 > Hs6912654 Length=1304 Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%) Query 33 RKQGRLMKLCLN-KNGGPPAFQYALRKLSPCGRDY 66 +K+ ++MKL L KNG PP + ALR+++ R++ Sbjct 492 QKERKIMKLLLKIKNGTPPMRKAALRQITDKAREF 526 > SPAC27F1.09c Length=1188 Score = 28.5 bits (62), Expect = 3.1, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Query 34 KQGRLMKLCLN-KNGGPPAFQYALRKLSPCGRDY 66 ++ ++++L L KNG PP + ALR+L+ RD+ Sbjct 377 RERKILRLLLKVKNGTPPMRKSALRQLTDQARDF 410 > At1g18950 Length=766 Score = 28.1 bits (61), Expect = 4.6, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 15/61 (24%) Query 14 PVVFRNTRSVARPRTAWTARKQGRLMKLCLNKNGGPPAFQYALRKLSPCGRDYLLRHHNK 73 P+ R TR P A T R Q RL +L Q A RKL P ++Y H + Sbjct 30 PLTLRRTR----PSRACTVRAQQRLQEL-----------QAAERKLKPPKKEYKREQHRR 74 Query 74 R 74 R Sbjct 75 R 75 > At5g27010 Length=863 Score = 27.3 bits (59), Expect = 8.0, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Query 4 SKTNTTEHHAPVVFRNTRSVARPRTAWTARKQGRLMKLCLNKNGGPPAFQYALRKLSPCG 63 + TE + + + +SVA R + K+G + N+ G P A +RK + G Sbjct 33 NNATNTEIKSKAIILHEQSVAAERDGFATSKKGLTLLELKNRTGHPNA---KVRKDALHG 89 Query 64 RDYLLRHH 71 LL+HH Sbjct 90 IKDLLKHH 97 Lambda K H 0.321 0.132 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1181410888 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40