bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_5267_orf1
Length=75
Score E
Sequences producing significant alignments: (Bits) Value
At5g64270 29.3 1.7
7296186 29.3 1.9
Hs6912654 29.3 2.0
SPAC27F1.09c 28.5 3.1
At1g18950 28.1 4.6
At5g27010 27.3 8.0
> At5g64270
Length=1269
Score = 29.3 bits (64), Expect = 1.7, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query 33 RKQGRLMKLCLN-KNGGPPAFQYALRKLSPCGRD 65
+K+ ++MKL L KNG PP + ALR+L+ R+
Sbjct 456 QKERKIMKLLLKVKNGTPPQRKTALRQLTDKARE 489
> 7296186
Length=1349
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query 34 KQGRLMKLCLN-KNGGPPAFQYALRKLSPCGRDY 66
K+ ++MKL L KNG PP + ALR+++ R++
Sbjct 538 KERKIMKLLLTIKNGSPPMRKSALRQITDKAREF 571
> Hs6912654
Length=1304
Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query 33 RKQGRLMKLCLN-KNGGPPAFQYALRKLSPCGRDY 66
+K+ ++MKL L KNG PP + ALR+++ R++
Sbjct 492 QKERKIMKLLLKIKNGTPPMRKAALRQITDKAREF 526
> SPAC27F1.09c
Length=1188
Score = 28.5 bits (62), Expect = 3.1, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query 34 KQGRLMKLCLN-KNGGPPAFQYALRKLSPCGRDY 66
++ ++++L L KNG PP + ALR+L+ RD+
Sbjct 377 RERKILRLLLKVKNGTPPMRKSALRQLTDQARDF 410
> At1g18950
Length=766
Score = 28.1 bits (61), Expect = 4.6, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 15/61 (24%)
Query 14 PVVFRNTRSVARPRTAWTARKQGRLMKLCLNKNGGPPAFQYALRKLSPCGRDYLLRHHNK 73
P+ R TR P A T R Q RL +L Q A RKL P ++Y H +
Sbjct 30 PLTLRRTR----PSRACTVRAQQRLQEL-----------QAAERKLKPPKKEYKREQHRR 74
Query 74 R 74
R
Sbjct 75 R 75
> At5g27010
Length=863
Score = 27.3 bits (59), Expect = 8.0, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query 4 SKTNTTEHHAPVVFRNTRSVARPRTAWTARKQGRLMKLCLNKNGGPPAFQYALRKLSPCG 63
+ TE + + + +SVA R + K+G + N+ G P A +RK + G
Sbjct 33 NNATNTEIKSKAIILHEQSVAAERDGFATSKKGLTLLELKNRTGHPNA---KVRKDALHG 89
Query 64 RDYLLRHH 71
LL+HH
Sbjct 90 IKDLLKHH 97
Lambda K H
0.321 0.132 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1181410888
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40