bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_5271_orf3
Length=109
Score E
Sequences producing significant alignments: (Bits) Value
SPAC1782.03 46.6 1e-05
At5g17900 37.7 0.006
7292185 37.0 0.009
At4g08580 37.0 0.010
Hs5174553 30.8 0.61
CE10372 30.4 0.93
> SPAC1782.03
Length=355
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 26/35 (74%), Gaps = 0/35 (0%)
Query 73 DDTDGLDAAQEYEDWKLRELERIRRDKEEQLEREK 107
DDTDG+D EYE WKLR L R +RDKE+ LE E+
Sbjct 183 DDTDGIDPQSEYELWKLRHLLRKKRDKEKSLELER 217
> At5g17900
Length=435
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 26/97 (26%)
Query 16 QQQVEQRKLETKQMVYAVLAREDEEAADAPVIPVEAQQQQQQQQQQQKNLMGSEEMPDDT 75
++++EQRKLETKQ+V + R+DEE +KN++ E D
Sbjct 212 KRKLEQRKLETKQIVVEEV-RKDEEI--------------------RKNILLEEANIGDV 250
Query 76 ---DGLDAAQEYEDWKLRELERIR--RDKEEQLEREK 107
D L+ A+EYE WK RE+ RI+ RD E + RE+
Sbjct 251 ETDDELNEAEEYEVWKTREIGRIKRERDAREAMLRER 287
> 7292185
Length=478
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 24/28 (85%), Gaps = 2/28 (7%)
Query 83 EYEDWKLRELERIRRDKEEQ--LEREKF 108
EYE WKLREL+R++RD+EE+ +EREK
Sbjct 313 EYEAWKLRELKRMKRDREERDNVEREKL 340
> At4g08580
Length=435
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 26/97 (26%)
Query 16 QQQVEQRKLETKQMVYAVLAREDEEAADAPVIPVEAQQQQQQQQQQQKNLMGSEEMPDDT 75
++++EQRK+ETKQ+V + R+DEE +KN++ E D
Sbjct 212 KRKLEQRKIETKQIVVEEV-RKDEEI--------------------RKNILLEEANIGDV 250
Query 76 ---DGLDAAQEYEDWKLRELERIR--RDKEEQLEREK 107
D L+ A+EYE WK RE+ RI+ RD E + RE+
Sbjct 251 ETDDELNEAEEYEVWKTREIGRIKRERDAREAMLRER 287
> Hs5174553
Length=439
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 20/23 (86%), Gaps = 2/23 (8%)
Query 87 WKLRELERIRRDKE--EQLEREK 107
WK+REL+RI+RD+E E LE+EK
Sbjct 279 WKVRELKRIKRDREDREALEKEK 301
> CE10372
Length=466
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 51/87 (58%), Gaps = 19/87 (21%)
Query 16 QQQVEQRKLETKQMVYAVLAREDEEAADAPVIPVEAQQQQQQQQQQQKNLMGSEEMPDDT 75
+++ E+RK E+ ++V VL ++EEAA ++++ + + + S D+T
Sbjct 255 EKRAEERKRESAKLVEKVL--QEEEAA-------------EKRKTEDRVDLSSVLTDDET 299
Query 76 DGLDAAQEYEDWKLRELERIRRDKEEQ 102
+ + YE WKLRE++R++R+++E+
Sbjct 300 ENM----AYEAWKLREMKRLKRNRDER 322
Lambda K H
0.307 0.122 0.317
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1199474506
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40