bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_5812_orf3
Length=57
Score E
Sequences producing significant alignments: (Bits) Value
Hs19924111 46.6 1e-05
HsM5174645 46.2 2e-05
CE15561 43.5 9e-05
SPCC70.03c 42.0 3e-04
7295507 40.4 9e-04
At3g30775 32.3 0.23
At5g38710 31.6 0.33
YBR263w 28.1 4.2
> Hs19924111
Length=600
Score = 46.6 bits (109), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 30/39 (76%), Gaps = 0/39 (0%)
Query 19 LLVDAEQSTLQAFIHLITVQAQKKYNLERPVIVNTYQAY 57
L+VDAEQ+ Q I +T++ Q+K+N+E+P+I NTYQ Y
Sbjct 377 LMVDAEQTYFQPAISRLTLEMQRKFNVEKPLIFNTYQCY 415
> HsM5174645
Length=516
Score = 46.2 bits (108), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 30/39 (76%), Gaps = 0/39 (0%)
Query 19 LLVDAEQSTLQAFIHLITVQAQKKYNLERPVIVNTYQAY 57
L+VDAEQ+ Q I +T++ Q+K+N+E+P+I NTYQ Y
Sbjct 293 LMVDAEQTYFQPAISRLTLEMQRKFNVEKPLIFNTYQCY 331
> CE15561
Length=564
Score = 43.5 bits (101), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 0/44 (0%)
Query 14 QKPTMLLVDAEQSTLQAFIHLITVQAQKKYNLERPVIVNTYQAY 57
+K ++VDAEQ+ LQ I IT++ KKYN R I NTYQAY
Sbjct 331 EKGVRIMVDAEQTYLQPAISKITIEMMKKYNKGRGNIFNTYQAY 374
> SPCC70.03c
Length=492
Score = 42.0 bits (97), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query 1 CEYAAQQQQQQQHQKPTMLLVDAEQSTLQAFIHLITVQAQKKYNLERPVIVNTYQAY 57
C++A ++Q L +DAEQ+ Q +H +TV +KYN E ++ NTYQ Y
Sbjct 254 CQFAKEKQ--------IPLFIDAEQTYFQDCMHAVTVDLMRKYNKEVAIVHNTYQLY 302
> 7295507
Length=671
Score = 40.4 bits (93), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 0/39 (0%)
Query 19 LLVDAEQSTLQAFIHLITVQAQKKYNLERPVIVNTYQAY 57
++VDAEQ+ Q I IT++ +KYN ++ ++ NTYQ Y
Sbjct 435 IMVDAEQTYFQPAISRITLEMMRKYNKDKAIVFNTYQCY 473
> At3g30775
Length=499
Score = 32.3 bits (72), Expect = 0.23, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query 19 LLVDAEQSTLQAFIHLITVQAQKKYNLE--RPVIVNTYQAY 57
LL+DAE + LQ I + + +N + RP++ NT QAY
Sbjct 279 LLIDAEDTILQPAIDYMAYSSAIMFNADKDRPIVYNTIQAY 319
> At5g38710
Length=476
Score = 31.6 bits (70), Expect = 0.33, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query 19 LLVDAEQSTLQAFIHLITVQAQKKYNLE--RPVIVNTYQAY 57
LL+DAE + LQ I + + +N + RP++ NT QAY
Sbjct 258 LLIDAEDTILQPAIDYMAYWSAIMFNSDKDRPIVYNTIQAY 298
> YBR263w
Length=565
Score = 28.1 bits (61), Expect = 4.2, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 0/41 (0%)
Query 8 QQQQQHQKPTMLLVDAEQSTLQAFIHLITVQAQKKYNLERP 48
QQ++ QK ++ L+ +E T +A + L+ + Q KY+ P
Sbjct 120 QQERHRQKHSITLIPSENFTSKAVMDLLGSELQNKYSEGYP 160
Lambda K H
0.318 0.125 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1191047922
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40