bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_6419_orf1
Length=87
Score E
Sequences producing significant alignments: (Bits) Value
Hs20357568 41.6 4e-04
CE06529 40.4 8e-04
At2g02770_2 29.6 1.3
Hs22050511 28.9 2.2
At3g11470 28.5 3.5
7301886 28.1 3.8
7291954 28.1 4.5
> Hs20357568
Length=309
Score = 41.6 bits (96), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query 16 FNVSHDEGLVVFGASRHL-VGVDCMRCSARGRDT-AEFLQQMKSHCAQKDWAYVMGAHLK 73
FN+SH V A L VG+D M+ S GR + EF MK K+W + +
Sbjct 107 FNISHQGDYAVLAAEPELQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDE 166
Query 74 EQQLRRFMRVWTVK 87
QL F R W +K
Sbjct 167 WTQLDMFYRNWALK 180
> CE06529
Length=299
Score = 40.4 bits (93), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query 16 FNVSHDEGLVVFGASRHLVGVDCMRCSARGRDTA-EFLQQMKSHCAQKDWAYVMGAHLKE 74
+NVSH LVV +GVD MR + R+TA E + +K H ++ + V G E
Sbjct 97 YNVSHHGDLVVLATGDTRIGVDVMRVNEARRETASEQMNTLKRHFSENEIEMVKGGDKCE 156
Query 75 -QQLRRFMRVWTVK 87
++ F R+W +K
Sbjct 157 LKRWHAFYRIWCLK 170
> At2g02770_2
Length=238
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query 14 VRFNVSHDEGLVVFGASRHL-VGVDCMRCSARGRDTAEFLQQMKSHCAQKDWAYVMGAHL 72
+ FN+SH + L+ G + H+ VG+D + + + L + + + ++
Sbjct 119 LHFNISHTDSLISCGVTVHVPVGIDLEEMERKIKH--DVLALAERFYSADEVKFLSAIPD 176
Query 73 KEQQLRRFMRVWTVK 87
E Q + F+++WT+K
Sbjct 177 PEVQRKEFIKLWTLK 191
> Hs22050511
Length=724
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query 37 DCMRCSARGRDTAEFLQQMKSH-------CAQKDWAYVMGAHLKE 74
C C R++++ LQ ++H CA+ A+VMG++L E
Sbjct 529 PCAECGKAFRESSQLLQHQRTHTGERPFECAECGQAFVMGSYLAE 573
> At3g11470
Length=275
Score = 28.5 bits (62), Expect = 3.5, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query 14 VRFNVSHDEGLVVFGASRHL-VGVDCMRCSARGR-DTAEFLQQMKSHCAQKDWAYVMGAH 71
+ FN+SH + L+ G + H+ VG+D + + D F ++ S + ++
Sbjct 119 LHFNISHTDSLIACGVTVHVPVGIDVEDKERKIKHDILAFAERFYS---ADEVKFLSTLP 175
Query 72 LKEQQLRRFMRVWTVK 87
E Q + F+++WT+K
Sbjct 176 DPEVQRKEFIKLWTLK 191
> 7301886
Length=457
Score = 28.1 bits (61), Expect = 3.8, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query 36 VDCMRCSARGRDTAEFLQQMKSHCAQKDWA-----------YVMGAHLKEQQ 76
++C C + R A + M+SH K +A Y M AHL+E +
Sbjct 369 LECQVCGFKTRTKAHLERHMRSHTGDKPFACPVCNKRFSQMYNMKAHLREHE 420
> 7291954
Length=1295
Score = 28.1 bits (61), Expect = 4.5, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query 4 RPSAGETADFVRFNVSHDEGLV-VFGASRHLVGVDCMRCSARG 45
R G +D F+V + G FG+S G DC RCS G
Sbjct 665 RRHGGRVSDSSLFSVYSNSGQRRYFGSSEGRFGYDCRRCSLDG 707
Lambda K H
0.327 0.135 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1187582654
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40