bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_6583_orf3
Length=60
Score E
Sequences producing significant alignments: (Bits) Value
SPAC22F3.10c 60.8 6e-10
CE03290 58.5 3e-09
Hs4557625 56.2 1e-08
7290879 55.5 3e-08
YJL101c 47.4 6e-06
7303255 26.9 8.7
> SPAC22F3.10c
Length=669
Score = 60.8 bits (146), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 0/60 (0%)
Query 1 YDQLIVLAALMMLITAGTPFLRGCVAATDTRWDTISMSVDSRKPEEKQKITKSRYSSNSL 60
YDQL + LM+ ++AGTP RG +A D RW+ I+ +VD R EE + + KSRY S L
Sbjct 329 YDQLTPITPLMLALSAGTPAFRGYLADQDCRWNVIAGAVDDRTEEEMKTVPKSRYDSVDL 388
> CE03290
Length=646
Score = 58.5 bits (140), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 9/66 (13%)
Query 1 YDQLIVLAALMMLITAGTPFLRGCVAATDTRWDTISMSVDSRKPEE---------KQKIT 51
YDQL + +++ ++A TP RG ++ D+RWD IS SVD R PEE K I
Sbjct 263 YDQLTPITPILLALSAATPIFRGKLSNVDSRWDIISASVDDRTPEERGLEPLKNSKWVID 322
Query 52 KSRYSS 57
KSRY S
Sbjct 323 KSRYDS 328
> Hs4557625
Length=637
Score = 56.2 bits (134), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 9/66 (13%)
Query 1 YDQLIVLAALMMLITAGTPFLRGCVAATDTRWDTISMSVDSRKPEEK---------QKIT 51
YDQL + ++M ++A +PF RG V+ D RW IS SVD R EE+ +I+
Sbjct 266 YDQLATICPIVMALSAASPFYRGYVSDIDCRWGVISASVDDRTREERGLEPLKNNNYRIS 325
Query 52 KSRYSS 57
KSRY S
Sbjct 326 KSRYDS 331
> 7290879
Length=717
Score = 55.5 bits (132), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 9/66 (13%)
Query 1 YDQLIVLAALMMLITAGTPFLRGCVAATDTRWDTISMSVDSRKPEE---------KQKIT 51
YDQL L +M+ +TA +P RG + +D RW+ IS SVD R EE K +I
Sbjct 260 YDQLAPLCPIMLALTAASPIYRGYLTESDCRWNVISSSVDCRTEEERGLAPLDQQKFRIA 319
Query 52 KSRYSS 57
KSRY S
Sbjct 320 KSRYDS 325
> YJL101c
Length=678
Score = 47.4 bits (111), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 0/47 (0%)
Query 1 YDQLIVLAALMMLITAGTPFLRGCVAATDTRWDTISMSVDSRKPEEK 47
YD L+ A +M+ +A P +G +A D RW+ IS +VD R P+E+
Sbjct 283 YDALVNFAPIMLAFSAAAPAFKGWLADQDVRWNVISGAVDDRTPKER 329
> 7303255
Length=5385
Score = 26.9 bits (58), Expect = 8.7, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 0/32 (0%)
Query 18 TPFLRGCVAATDTRWDTISMSVDSRKPEEKQK 49
T LR + A +++W I++S+D R KQK
Sbjct 2072 TGVLRDRIKALESQWRNINISIDERAKLSKQK 2103
Lambda K H
0.318 0.128 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1181901402
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40