bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_6592_orf2
Length=110
Score E
Sequences producing significant alignments: (Bits) Value
7300337 35.4 0.030
SPBC13A2.01c 35.0 0.031
Hs19923387 33.1 0.12
At5g44200 32.7 0.17
CE09667 30.8 0.59
ECU02g0290 29.6 1.6
At4g38750 29.3 1.8
CE02598 28.1 4.7
CE09342 27.7 6.2
> 7300337
Length=154
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 19/26 (73%), Gaps = 0/26 (0%)
Query 1 YGRGTTGRQWRDEWRDFYDPGRGGEG 26
YGRG TG Q RDE+R YD GRGG G
Sbjct 115 YGRGKTGGQVRDEYRTDYDAGRGGYG 140
> SPBC13A2.01c
Length=182
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 0/29 (0%)
Query 1 YGRGTTGRQWRDEWRDFYDPGRGGEGGER 29
YGRG +G Q RDE R+ +DPGRGG R
Sbjct 117 YGRGASGGQVRDEMREEFDPGRGGYAKNR 145
> Hs19923387
Length=156
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 19/26 (73%), Gaps = 0/26 (0%)
Query 1 YGRGTTGRQWRDEWRDFYDPGRGGEG 26
YGRG +G Q RDE+R YD GRGG G
Sbjct 125 YGRGRSGGQVRDEYRQDYDAGRGGYG 150
> At5g44200
Length=257
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query 1 YGRGTTGRQWRDEWRDFYDPGRGGEGGERGKRAREEFEA 39
+GRG +G Q RDE+R YDP RGG GK ++E EA
Sbjct 119 WGRGRSGGQVRDEYRTDYDPARGG----YGKLVQKELEA 153
> CE09667
Length=154
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 17/24 (70%), Gaps = 0/24 (0%)
Query 1 YGRGTTGRQWRDEWRDFYDPGRGG 24
YGRG G Q RDE+R YDP RGG
Sbjct 122 YGRGKHGGQVRDEYRKDYDPERGG 145
> ECU02g0290
Length=305
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query 31 KRAREEFEA----CLMASQLPPVDQMAYARNTRHRWGPVG 66
+R E+F A CL+A+ L + +R T+ R+GP+G
Sbjct 114 RRIIEDFSANTRFCLIANHLRKIISPILSRCTKFRFGPIG 153
> At4g38750
Length=1073
Score = 29.3 bits (64), Expect = 1.8, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query 33 AREEFEACLMASQLPPVDQMAYARNTRHRWGPVGPRAGIGMPYGGHFPLEERRYSRGGQP 92
A+EEF++C S + NT+H W + P +G P + RG
Sbjct 863 AKEEFDSCKRPSFI----------NTKHGWFSLAPLVCVGKPKITAVSISTALVVRGDTT 912
Query 93 QHEG 96
+H G
Sbjct 913 EHPG 916
> CE02598
Length=608
Score = 28.1 bits (61), Expect = 4.7, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query 15 RDFYDPGRGGEGGERGKRAREEFEACLMASQLPPVD-----QMAYARNTRHRWGPVG 66
RD R E E RAR+EF++C ++L +D +AY R H +G
Sbjct 289 RDAVSMKRWLEHPENQDRARQEFQSCSRFAKLKSIDITIDGNLAYLRFDAHTGDAMG 345
> CE09342
Length=296
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 0/25 (0%)
Query 52 MAYARNTRHRWGPVGPRAGIGMPYG 76
+ Y RN R+ WG +GP G +G
Sbjct 98 LKYVRNVRYEWGDIGPDFECGPTFG 122
Lambda K H
0.321 0.143 0.484
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1195973986
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40