bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_6709_orf2
Length=51
Score E
Sequences producing significant alignments: (Bits) Value
At4g03430 54.7 4e-08
Hs6912732 46.6 1e-05
7293846 42.7 2e-04
CE28858 34.3 0.058
SPBC6B1.07 31.6 0.35
> At4g03430
Length=1029
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 31/47 (65%), Gaps = 0/47 (0%)
Query 4 TAQAIIRAAIKEGVENINAKRVWSEDAEECLSRGSITVARALYTHAL 50
T QAII+ I GVE + KR W DA+EC RGSI ARA+Y HAL
Sbjct 606 TCQAIIKNTIGIGVEEEDRKRTWVADADECKKRGSIETARAIYAHAL 652
> Hs6912732
Length=941
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 0/48 (0%)
Query 4 TAQAIIRAAIKEGVENINAKRVWSEDAEECLSRGSITVARALYTHALE 51
T QA++RA I G+E + K W EDA+ C++ ++ ARA+Y +AL+
Sbjct 521 TCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQ 568
> 7293846
Length=913
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 0/46 (0%)
Query 6 QAIIRAAIKEGVENINAKRVWSEDAEECLSRGSITVARALYTHALE 51
Q+I++A I GVE + K+ W +DAE C + ARA+Y HAL+
Sbjct 495 QSIVKAVIGIGVEEEDRKQTWIDDAEFCAKENAFECARAVYAHALQ 540
> CE28858
Length=968
Score = 34.3 bits (77), Expect = 0.058, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 0/48 (0%)
Query 4 TAQAIIRAAIKEGVENINAKRVWSEDAEECLSRGSITVARALYTHALE 51
T QAIIR I GVE+ + + W DAE + T R +Y AL+
Sbjct 547 TCQAIIRNVIGLGVEDEDKRTTWLADAENFEKEEAFTCVRTVYAIALK 594
> SPBC6B1.07
Length=906
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 0/47 (0%)
Query 4 TAQAIIRAAIKEGVENINAKRVWSEDAEECLSRGSITVARALYTHAL 50
TAQAII + G++ + W +DA+ ++R I ARA++ +L
Sbjct 491 TAQAIINTCLGVGLDEEDQFDTWLDDAQSFIARKCIDCARAVFAFSL 537
Lambda K H
0.319 0.128 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1161614636
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40