bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_6754_orf3
Length=55
Score E
Sequences producing significant alignments: (Bits) Value
CE22211 33.5 0.11
Hs11024704 32.3 0.20
7298929 32.3 0.22
> CE22211
Length=390
Score = 33.5 bits (75), Expect = 0.11, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query 3 EVGKMVKKILDISRVWWLRQKGFMTATLKQFVESGETPECFVIVA 47
E+G+ K IL+I R WL GF T + ++V +PE +I+A
Sbjct 345 ELGRRAKAILEIGRAIWLESVGFKTRVV-EYVPPEVSPENLLILA 388
> Hs11024704
Length=481
Score = 32.3 bits (72), Expect = 0.20, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query 1 KREVGKMVKKILDISRVWWLRQKGFMTATLKQFVESGETPECFVIVANPHSGSS 54
K+++G + K ++D R+ +L+QKGF A L+ + + + E ++ A P+ SS
Sbjct 424 KKKIGHLCKLLIDQGRIQYLQQKGFSPA-LQYYTDPLVSLENVLLTALPNHSSS 476
> 7298929
Length=434
Score = 32.3 bits (72), Expect = 0.22, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query 1 KREVGKMVKKILDISRVWWLRQKGFMTATLKQFVESGETPECFVIVANPHS 51
+ ++G+ K++LD R+ LR G+ A LK +V T E V++A P S
Sbjct 376 REQIGQQCKRVLDYGRLEHLRSHGYQ-AELKFYVPRDVTLENVVLLARPTS 425
Lambda K H
0.319 0.132 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1197145602
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40