bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_6808_orf1
Length=78
Score E
Sequences producing significant alignments: (Bits) Value
Hs14150015 40.0 0.001
At3g12760 36.6 0.011
7293667 35.0 0.036
Hs14725791 34.7 0.039
At5g09950 30.0 0.96
Hs4504013 30.0 0.97
7296379 27.7 5.6
> Hs14150015
Length=237
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 0/55 (0%)
Query 23 AAAGKAIHGEGLKRLSGDLGVGLDDIFFLVFAFHCGCRTQGVITREDFLRGLRSL 77
A + + EG+++ D+GV ++I LV A+ + G T+E++L+G+ SL
Sbjct 59 AGPDEVVGPEGMEKFCEDIGVEPENIIMLVLAWKLEAESMGFFTKEEWLKGMTSL 113
> At3g12760
Length=250
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 0/50 (0%)
Query 29 IHGEGLKRLSGDLGVGLDDIFFLVFAFHCGCRTQGVITREDFLRGLRSLG 78
I EG+ L DL V DI LV ++H T +R++F+ GL++LG
Sbjct 75 ILAEGISVLCNDLEVEPQDIVTLVLSWHMNAATACEFSRQEFISGLQALG 124
> 7293667
Length=233
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 0/47 (0%)
Query 32 EGLKRLSGDLGVGLDDIFFLVFAFHCGCRTQGVITREDFLRGLRSLG 78
+G+++ D+GV ++I LV A+ G G +++++L+GL L
Sbjct 56 DGMEKFCEDIGVEPENIVMLVLAYKMGATQMGFFSQQEWLKGLTELD 102
> Hs14725791
Length=292
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 0/46 (0%)
Query 32 EGLKRLSGDLGVGLDDIFFLVFAFHCGCRTQGVITREDFLRGLRSL 77
EG+++ D+GV +++ LV A+ + G T +++L+G+ SL
Sbjct 123 EGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSL 168
> At5g09950
Length=995
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query 5 PGAAGAAAATGAAAAAAAAAAGKAIHGEGLKRLSGDLGVGLDDIFFLVFA 54
PG+ ++ + A+ A G+ IHGE LK L DL V + + ++A
Sbjct 413 PGSFTLISSLSSCASLKWAKLGQQIHGESLK-LGIDLNVSVSNALMTLYA 461
> Hs4504013
Length=1020
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query 29 IHGEGLKRLSGDLGVGLDDIFFLVFAFHCGCRTQGVITR 67
I EGLKR L D+FF HCGC + V+ R
Sbjct 417 ILSEGLKRAGHQLQ---HDLFFDTLKIHCGCSVKEVLGR 452
> 7296379
Length=2444
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 0/26 (0%)
Query 3 CEPGAAGAAAATGAAAAAAAAAAGKA 28
C PGAA A ++ GAA +A A G A
Sbjct 383 CPPGAASAPSSMGAAPSATAVPLGPA 408
Lambda K H
0.325 0.139 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1171925608
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40