bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_6808_orf1 Length=78 Score E Sequences producing significant alignments: (Bits) Value Hs14150015 40.0 0.001 At3g12760 36.6 0.011 7293667 35.0 0.036 Hs14725791 34.7 0.039 At5g09950 30.0 0.96 Hs4504013 30.0 0.97 7296379 27.7 5.6 > Hs14150015 Length=237 Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 0/55 (0%) Query 23 AAAGKAIHGEGLKRLSGDLGVGLDDIFFLVFAFHCGCRTQGVITREDFLRGLRSL 77 A + + EG+++ D+GV ++I LV A+ + G T+E++L+G+ SL Sbjct 59 AGPDEVVGPEGMEKFCEDIGVEPENIIMLVLAWKLEAESMGFFTKEEWLKGMTSL 113 > At3g12760 Length=250 Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 0/50 (0%) Query 29 IHGEGLKRLSGDLGVGLDDIFFLVFAFHCGCRTQGVITREDFLRGLRSLG 78 I EG+ L DL V DI LV ++H T +R++F+ GL++LG Sbjct 75 ILAEGISVLCNDLEVEPQDIVTLVLSWHMNAATACEFSRQEFISGLQALG 124 > 7293667 Length=233 Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust. Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 0/47 (0%) Query 32 EGLKRLSGDLGVGLDDIFFLVFAFHCGCRTQGVITREDFLRGLRSLG 78 +G+++ D+GV ++I LV A+ G G +++++L+GL L Sbjct 56 DGMEKFCEDIGVEPENIVMLVLAYKMGATQMGFFSQQEWLKGLTELD 102 > Hs14725791 Length=292 Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust. Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 0/46 (0%) Query 32 EGLKRLSGDLGVGLDDIFFLVFAFHCGCRTQGVITREDFLRGLRSL 77 EG+++ D+GV +++ LV A+ + G T +++L+G+ SL Sbjct 123 EGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSL 168 > At5g09950 Length=995 Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query 5 PGAAGAAAATGAAAAAAAAAAGKAIHGEGLKRLSGDLGVGLDDIFFLVFA 54 PG+ ++ + A+ A G+ IHGE LK L DL V + + ++A Sbjct 413 PGSFTLISSLSSCASLKWAKLGQQIHGESLK-LGIDLNVSVSNALMTLYA 461 > Hs4504013 Length=1020 Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%) Query 29 IHGEGLKRLSGDLGVGLDDIFFLVFAFHCGCRTQGVITR 67 I EGLKR L D+FF HCGC + V+ R Sbjct 417 ILSEGLKRAGHQLQ---HDLFFDTLKIHCGCSVKEVLGR 452 > 7296379 Length=2444 Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust. Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 0/26 (0%) Query 3 CEPGAAGAAAATGAAAAAAAAAAGKA 28 C PGAA A ++ GAA +A A G A Sbjct 383 CPPGAASAPSSMGAAPSATAVPLGPA 408 Lambda K H 0.325 0.139 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1171925608 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40