bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_7209_orf2 Length=65 Score E Sequences producing significant alignments: (Bits) Value CE10130 49.3 2e-06 SPAC21E11.07 41.6 4e-04 7299068 40.4 9e-04 At4g12130 35.4 0.025 Hs20479074 32.0 0.25 Hs17436229 28.1 4.6 > CE10130 Length=305 Score = 49.3 bits (116), Expect = 2e-06, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 0/63 (0%) Query 1 KMLIRQQMQLACQSLLLVHGAGAKQFLQGLITKDMESLNSVPLVYSFLLNVRGRILADFF 60 +M ++ ++L + LL +HG+ FLQGLIT D+ L + + +FLLN +GRI+ D Sbjct 25 QMSTQRLIKLPHRVLLKLHGSDTNAFLQGLITNDVTKLQTQNGLAAFLLNTKGRIVEDVL 84 Query 61 IYR 63 ++R Sbjct 85 LWR 87 > SPAC21E11.07 Length=325 Score = 41.6 bits (96), Expect = 4e-04, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Query 11 ACQSLLLVHGAGAKQFLQGLITKDMESLNSVPLVYSFLLNVRGRILADFFIY 62 + +SL+ V G A +FLQGL T + N V Y+ LN +GR+L D FIY Sbjct 27 SSKSLIRVEGVDAVKFLQGLTTNKITLDNPV---YTGFLNTQGRVLFDSFIY 75 > 7299068 Length=348 Score = 40.4 bits (93), Expect = 9e-04, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Query 10 LACQSLLLVHGAGAKQFLQGLITKDMESLNS---VPLVYSFLLNVRGRILADFFIYRLD 65 L + L+ VHGA FLQGL T D+ + S +Y+ LN GR+L D +YR + Sbjct 43 LGNRELIRVHGAEVVPFLQGLATNDVARIQSPGGPASMYAHFLNKAGRLLYDTILYRTN 101 > At4g12130 Length=363 Score = 35.4 bits (80), Expect = 0.025, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 20/73 (27%) Query 9 QLACQSLLLVHGAGAKQFLQGLITKD-------------------MESLNSVPLVYSFLL 49 +L +S++ G +FLQGL+T D M S+ + P+ Y+ LL Sbjct 34 RLKSRSVVRFSGPDTVKFLQGLLTNDVRRFGESSGEKNSAVPTPNMASVTNPPM-YAALL 92 Query 50 NVRGRILADFFIY 62 +GR L DFF+Y Sbjct 93 TPQGRFLYDFFLY 105 > Hs20479074 Length=356 Score = 32.0 bits (71), Expect = 0.25, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 8/64 (12%) Query 9 QLACQSLLLVHGAGAKQFLQGLITKDMESLNSVPLV--------YSFLLNVRGRILADFF 60 +L ++LL V G A FL GL+T ++ + Y+ LNV+GR L D Sbjct 52 RLDGRTLLRVRGPDAAPFLLGLLTNELPLPSPAAAGAPPAARAGYAHFLNVQGRTLYDVI 111 Query 61 IYRL 64 +Y L Sbjct 112 LYGL 115 > Hs17436229 Length=230 Score = 28.1 bits (61), Expect = 4.6, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 0/36 (0%) Query 26 FLQGLITKDMESLNSVPLVYSFLLNVRGRILADFFI 61 FL+ L KD+ L+S P V +F V G D F+ Sbjct 6 FLRALANKDIRELSSQPTVPAFPEGVAGEWQQDMFV 41 Lambda K H 0.332 0.144 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1166657202 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40