bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_7375_orf1
Length=62
Score E
Sequences producing significant alignments: (Bits) Value
CE02609_1 45.1 3e-05
YGL065c 41.2 4e-04
SPBC32H8.14 40.0 0.001
Hs14861836 39.3 0.002
At1g78800 37.7 0.005
7292312 35.4 0.029
Hs6996014 29.3 2.1
CE28488 28.9 2.1
Hs15029520 28.9 2.2
7293481 28.5 2.8
SPBC2G2.12 28.5 3.0
At3g17740_2 28.5 3.5
> CE02609_1
Length=384
Score = 45.1 bits (105), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 6/47 (12%)
Query 18 SLNRFEEKKNIELALTAVASLPQEI------KCNLIVAGGFDPRLPE 58
SLNRFE KKNI LAL A L + +C+L++AGG+D + PE
Sbjct 214 SLNRFERKKNIVLALDAFEKLKSNLPADEFSQCHLVIAGGYDLKNPE 260
> YGL065c
Length=503
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query 15 YAISLNRFEEKKNIELALTAVASLPQEIKCN--LIVAGGFDPRLPECSAY 62
+ +S+NRFE+KK++ LA+ A A +I N L++ GG+D R+ E Y
Sbjct 219 FYLSINRFEKKKDVALAIKAFALSEDQINDNVKLVICGGYDERVAENVEY 268
> SPBC32H8.14
Length=511
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 7/52 (13%)
Query 17 ISLNRFEEKKNIELALTAVASLPQEIKCN------LIVAGGFDPRLPECSAY 62
IS+NRFE KK+I LA+ A ++L +++ N L+VAGG+D R+ E Y
Sbjct 230 ISVNRFERKKDIRLAIDAFSAL-RDLSANRFPEYLLLVAGGYDIRVSENRRY 280
> Hs14861836
Length=416
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 6/48 (12%)
Query 17 ISLNRFEEKKNIELALTAVASLPQEI------KCNLIVAGGFDPRLPE 58
+S+NR+E KKN+ LAL A+ L + + +LIVAGG+D R+ E
Sbjct 229 LSINRYERKKNLTLALEALVQLRGRLTSQDWERVHLIVAGGYDERVLE 276
> At1g78800
Length=405
Score = 37.7 bits (86), Expect = 0.005, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 6/52 (11%)
Query 17 ISLNRFEEKKNIELALTAVASLPQEIK----CNLIVAG--GFDPRLPECSAY 62
+S+NRFE KKNI+LA++A A L + + L VAG G+D RL E Y
Sbjct 213 LSINRFERKKNIDLAVSAFAILCKHKQNLSDVTLTVAGKCGYDERLKENVEY 264
> 7292312
Length=424
Score = 35.4 bits (80), Expect = 0.029, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query 17 ISLNRFEEKKNIELALTAVASLPQEI------KCNLIVAGGFDPRLPE 58
+ +NR+E KKN LAL ++ L + +C LI+AGG+D R E
Sbjct 226 LDINRYERKKNHALALHSLRLLGDMLPATDFKRCRLIIAGGYDTRCME 273
> Hs6996014
Length=509
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query 8 QFDLSVPYA--ISLNRFEEKKNIELALTAVASLPQEIK--------CNLIVAGGFDPRLP 57
++DL+VP+A +++N+ K +A P + C+ +AG FDP +P
Sbjct 128 RYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIP 187
Query 58 E 58
+
Sbjct 188 D 188
> CE28488
Length=437
Score = 28.9 bits (63), Expect = 2.1, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query 1 RPFAELQQFDLSVPYAISLNRFEEKKNIELALTAVASLPQE-IKCNLIVAGGFDPRLPEC 59
RP + Q+ +S+NRF +K +++ + A + L Q+ ++ +AG P +PE
Sbjct 189 RPVSRAQRAKNETYTFLSMNRFWPEKRLDIIIEAASILKQKGYHFHVQLAGSVMPHIPES 248
Query 60 SAY 62
Y
Sbjct 249 RIY 251
> Hs15029520
Length=506
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query 8 QFDLSVPYA--ISLNRFEEKKNIELALTAVASLPQEIK--------CNLIVAGGFDPRLP 57
++DL+VP+A +++N+ ++ K + P ++ C+ +AG FDP +P
Sbjct 129 RYDLTVPFARYLAMNKVKKMKRYHVGKVWRRESPTIVQGRYREFCQCDFDIAGQFDPMIP 188
Query 58 E 58
+
Sbjct 189 D 189
> 7293481
Length=522
Score = 28.5 bits (62), Expect = 2.8, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query 8 QFDLSVPYA--ISLNRFEEKKNIELALTAVASLPQEIK--------CNLIVAGGFDPRLP 57
++DL+VP A +++N+ K +A P K C+ +AG +DP LP
Sbjct 131 RYDLTVPLARYLAMNKISSIKRYHIAKVYRRDNPAMTKGRYREFYQCDFDIAGTYDPMLP 190
Query 58 E 58
+
Sbjct 191 D 191
> SPBC2G2.12
Length=538
Score = 28.5 bits (62), Expect = 3.0, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query 8 QFDLSVPYA---------ISLNRFEEKKNIELALTAVAS--LPQEIKCNLIVAGGFDPRL 56
++DL+VP+A S+ RF K A+ + + +C+ +AG +DP +
Sbjct 135 RYDLTVPFARWLAMNPKVTSIKRFHIAKVYRRDQPAMTKGRMREFYQCDFDIAGNYDPMI 194
Query 57 PECSA 61
P+ A
Sbjct 195 PDSEA 199
> At3g17740_2
Length=509
Score = 28.5 bits (62), Expect = 3.5, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 0/30 (0%)
Query 16 AISLNRFEEKKNIELALTAVASLPQEIKCN 45
A S N ++ ++ALT++ LP+E++CN
Sbjct 169 AASGNMKHARRVFDMALTSICGLPKELQCN 198
Lambda K H
0.321 0.137 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1175803722
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40