bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_7390_orf2
Length=84
Score E
Sequences producing significant alignments: (Bits) Value
YNL256w 43.1 1e-04
SPBC1734.03 39.3 0.002
At4g30000 33.9 0.069
ECU05g1120i 28.1 3.8
At1g69190 27.7 5.3
Hs22058377 27.7 5.5
Hs21359935 27.7 5.7
> YNL256w
Length=864
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query 4 VDSASYSMQVNTTNLTLPHPRLAQRNFILFPLCD-IKPDLVHPTERE 49
++SA + VN +L +PHPR+ +R F+L PLC+ I P +HP E
Sbjct 439 LNSAGEDIIVNEPDLNIPHPRMLERTFVLEPLCELISPVHLHPVTAE 485
> SPBC1734.03
Length=686
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 0/28 (0%)
Query 18 LTLPHPRLAQRNFILFPLCDIKPDLVHP 45
LT+PH L +R F+L PL + PDLVHP
Sbjct 358 LTIPHLGLQEREFVLRPLLALSPDLVHP 385
> At4g30000
Length=554
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 0/28 (0%)
Query 11 MQVNTTNLTLPHPRLAQRNFILFPLCDI 38
M++++ L +PH RL +R+F+L PL D+
Sbjct 188 MRISSDKLIIPHERLWERSFVLAPLVDL 215
> ECU05g1120i
Length=337
Score = 28.1 bits (61), Expect = 3.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 0/53 (0%)
Query 31 ILFPLCDIKPDLVHPTERETMKNLILKNMRRREEALRHSASSSGETSDAARLM 83
I+FP+ +K + V T+R+ + K EE +R S S+AARL+
Sbjct 262 IVFPILQLKGECVRITDRDGREMAFEKYQEFEEEFVRKSIHPGDLKSNAARLI 314
> At1g69190
Length=459
Score = 27.7 bits (60), Expect = 5.3, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 0/27 (0%)
Query 12 QVNTTNLTLPHPRLAQRNFILFPLCDI 38
++ + L +PH R+ +R F+L PL D+
Sbjct 90 KIISDKLIIPHERIWERPFVLAPLVDL 116
> Hs22058377
Length=372
Score = 27.7 bits (60), Expect = 5.5, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 8/48 (16%)
Query 37 DIKPDLVHPTERETMKNLILKNMRRREE----ALRHSASSSGETSDAA 80
+I+ ++HP RET++N I+ R R+E AL+H G+ DAA
Sbjct 14 EIRVTVIHPP-RETLENNIISRERTRKEPKDVALKH---QEGDVKDAA 57
> Hs21359935
Length=2113
Score = 27.7 bits (60), Expect = 5.7, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query 4 VDSASYSMQVN----TTNLTLPHPRLAQRNFILFPLCDIKPDLVHPTERETMKN 53
V A +S VN T ++L HP L Q L + DI+P +P R+ +K+
Sbjct 1744 VTDAEFSQAVNPQSFCTGVSLHHPTLIQSTGPLIDMSDIRPG-TNPVSRKNVKS 1796
Lambda K H
0.317 0.128 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1197406694
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40