bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_0128_orf1 Length=305 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_002750 exosome complex exonuclease, putative (EC:3.... 129 1e-29 cpv:cgd8_340 exoribonuclease PH ; K12589 exosome complex compo... 108 2e-23 bbo:BBOV_IV008760 23.m05910; hypothetical protein; K12589 exos... 96.3 1e-19 pfa:MAL13P1.204 exoribonuclease PH, putative; K12589 exosome c... 94.4 5e-19 hsa:23016 EXOSC7, EAP1, FLJ26543, KIAA0116, RRP42, Rrp42p, hRr... 85.9 2e-16 mmu:66446 Exosc7, 2610002K22Rik, AV212732, mKIAA0116; exosome ... 84.3 5e-16 dre:550247 zgc:110717; K12589 exosome complex component RRP42 82.4 2e-15 xla:446601 exosc7, MGC81766; exosome component 7; K12589 exoso... 77.4 6e-14 ath:AT3G07750 3' exoribonuclease family domain 1-containing pr... 77.0 8e-14 cel:F31D4.1 exos-7; EXOSome (multiexonuclease complex) compone... 64.3 6e-10 cel:F37C12.13 exos-9; EXOSome (multiexonuclease complex) compo... 55.8 2e-07 dre:323016 exosc8, MGC174638, wu:fb79a10, zgc:110381; exosome ... 55.8 2e-07 hsa:11340 EXOSC8, CIP3, EAP2, OIP2, RP11-421P11.3, RRP43, Rrp4... 50.1 1e-05 xla:496046 hypothetical LOC496046; K12586 exosome complex comp... 49.3 2e-05 xla:379078 exosc8, MGC132146, MGC52847; exosome component 8; K... 48.1 4e-05 mmu:69639 Exosc8, 2310032N20Rik, CIP3, KIAA4013, mKIAA4013; ex... 45.1 3e-04 cpv:cgd7_230 RPR45-like archaeo-eukaryotic exosomal RNAse PH ;... 38.1 0.038 ath:AT3G12990 RRP45a; RRP45a (Ribonuclease PH45a); 3'-5'-exori... 37.7 0.054 hsa:56957 OTUD7B, CEZANNE, ZA20D1; OTU domain containing 7B (E... 34.3 0.56 mmu:229603 Otud7b, 2900060B22Rik, 4930463P07Rik, AI462125, CEZ... 33.5 0.90 dre:450057 exosc9, im:6909054, zgc:101680; exosome component 9... 32.7 1.7 mmu:237558 Gm239; predicted gene 239 31.6 cel:F41G3.14 exos-8; EXOSome (multiexonuclease complex) compon... 31.2 4.9 ath:AT3G60500 CER7; CER7 (ECERIFERUM 7); 3'-5'-exoribonuclease... 30.8 6.1 dre:567622 eif2c1; eukaryotic translation initiation factor 2C... 30.8 6.5 mmu:214150 Eif2c3, AW048688, Ago3, C130014L07Rik; eukaryotic t... 30.8 6.6 hsa:192669 EIF2C3, AGO3, FLJ12765, MGC86946; eukaryotic transl... 30.4 9.5 > tgo:TGME49_002750 exosome complex exonuclease, putative (EC:3.1.13.-); K12589 exosome complex component RRP42 Length=297 Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 100/308 (32%), Positives = 150/308 (48%), Gaps = 65/308 (21%) Query 10 QGAISRAETAFVREGVACGVRGDGRGRAELRPRVLAVDLLPFSCSSAAIQTEENTVIATV 69 +G + AE ++ EGVAC VR DGR E+RP + LP +SA +++ ENTV+ V Sbjct 43 RGLLCGAELLYLEEGVACNVREDGRACVEVRPSQVETFALPKCSASAIVRSSENTVLCGV 102 Query 70 DADVILPGGGGNQEPYSVSVGCGAAEQELADVTG--------GDGSSLSSLLQAMLEQLL 121 + P ++ ++V C AA G G+GSS SSL QA+L ++ Sbjct 103 SMQLARPTAAPDEGEVFLTVDCSAALGVGGVGGGVALESFGLGEGSSNSSL-QALLSDMV 161 Query 122 LPHL--KPLTDPDGRLQWRISIDVIVLRAGGCLLDAVSLAIWGALKALKLPNVMVEEEDE 179 L + K L G+L WR+ +D +VL+AGGCLLDAVSLA+ AL+ LP V V+EE+ Sbjct 162 LSAVDKKKLCLVPGKLIWRVFVDCMVLKAGGCLLDAVSLAVHAALRTTVLPCVFVDEEEG 221 Query 180 KDQGLAITEYKVSCDERIAAGTPYPIDTVPILITAAQIGDTYVWDLTEIEATCGDSFLVA 239 ++ A+ + + CDER AAG +P++ +PI++T + Sbjct 222 EEGDGALGQISIQCDEREAAGECFPVEDIPIIVTVGE----------------------- 258 Query 240 AFLPSGACVGLQKFGHVLADCRTLQTTLTTSQRLSREILEDLQRQAEMKKSRLNG-NLDS 298 SQR+ REI E L+RQ +K++ N L + Sbjct 259 -----------------------------NSQRVCREIFERLERQIASQKTKKNSQQLSA 289 Query 299 FL-SLASL 305 F+ S+A L Sbjct 290 FMRSMADL 297 > cpv:cgd8_340 exoribonuclease PH ; K12589 exosome complex component RRP42 Length=295 Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 130/297 (43%), Gaps = 26/297 (8%) Query 5 FFSSFQGAISRAETAFVREGVACGVRGDGRGRAELRPRVLAVDLLPFSCSSAAIQTEENT 64 F S +IS +E F+ +GV G+R DGR + RP V+A+D++ + S+ I+ +E Sbjct 12 FLKSMTKSISDSEKLFLEDGVDQGIRNDGRDLTDFRPIVIALDVISTANGSSRIRNDELD 71 Query 65 VIATVDADVILPGGGGNQEPYSVSVGCGAAEQELADVTGGDGSSL-----SSLLQAMLEQ 119 +I V + + + + D S S + +++ Sbjct 72 IIVAVKVSFL-------NNLFFFIIALILFSSNIMDKISNVAPSFTEEDYSFYITNIVKD 124 Query 120 LLLPH--LKPLTDPDGRLQWRISIDVIVLRAGGCLLDAVSLAIWGALKALKLPNVMVE-- 175 + + L LT + +L W I ID +L GG ++D V++AI AL+ ++P + V Sbjct 125 MCFKNFDLSKLTILENKLYWNIYIDATILSFGGNMVDWVTIAIHTALRTTRIPKIHVSPS 184 Query 176 ---EEDEKDQGLAITEYKVSCDERIAAGTPYPIDTVPILITAAQIGDTYVWDLTEIEATC 232 +E+ KD Y VS + +GTP+P +P +I+A I +WD+ E C Sbjct 185 ISTKENNKD-----VSYTVS--PSVCSGTPFPFQDIPFIISAGCIRGKVIWDMNMQEQIC 237 Query 233 GDSFLVAAFLPSGACVGLQKFGHVLADCRTLQTTLTTSQRLSREILEDLQRQAEMKK 289 + + + G CV + K D + T + + +S EI + L K+ Sbjct 238 SKTIIALSINSKGECVAMNKVYSNTLDLNLIPTIINKAAEISSEISKSLDEFFSNKQ 294 > bbo:BBOV_IV008760 23.m05910; hypothetical protein; K12589 exosome complex component RRP42 Length=267 Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 117/237 (49%), Gaps = 4/237 (1%) Query 20 FVREGVACGVRGDGRGRAELRPRVL-AVDLLPFSCSSAAIQTEENTVIATVDADVILPGG 78 F+R +A R DGR R + P++L ++ + SA + ++ VI T+ V P Sbjct 3 FIRNALAANCRLDGR-RLDDNPKILIEPNVSTGAHGSAKVILDDTVVITTIMFHVTSPNT 61 Query 79 GGNQEPYSVSVGCGAA-EQELADVTGGDGSSLSSLLQAMLEQLLLPHLKPLTDPDGRLQW 137 +E +V + G+ E +D++ ++ +L+ + L + K L G+ W Sbjct 62 NSPEEG-NVEITLGSPFTLEDSDISQKRDERMAHILEMLQFHKQLFNRKLLCILSGQYVW 120 Query 138 RISIDVIVLRAGGCLLDAVSLAIWGALKALKLPNVMVEEEDEKDQGLAITEYKVSCDERI 197 + I VL+ GG ++DAVS+A+ A+ + +PN+ +DE + T ++ E Sbjct 121 TMRIHTTVLQRGGGVMDAVSVAVICAMLTVSVPNIRGVIKDELESSRTATNVRLRTMEGY 180 Query 198 AAGTPYPIDTVPILITAAQIGDTYVWDLTEIEATCGDSFLVAAFLPSGACVGLQKFG 254 +P+L+T A+IG+++VW + + EA C D FL A P+G C G++ G Sbjct 181 NTDIEKLAREIPVLVTVARIGESHVWSVNQEEAACADGFLTVAVFPNGNCAGIRAVG 237 > pfa:MAL13P1.204 exoribonuclease PH, putative; K12589 exosome complex component RRP42 Length=278 Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 64/270 (23%), Positives = 126/270 (46%), Gaps = 12/270 (4%) Query 20 FVREGVACGVRGDGRGRAELRPRVLAVDLLPFSCSSAAIQTEENTVIATVDADVILPGGG 79 ++ + + C +R DGR R + ++L S+++ EEN VI + +I P Sbjct 6 YIEDSINCNIRIDGRTLLTYRSIEINKNILVSGDGSSSVINEENNVICGIKLSLITPDVD 65 Query 80 GNQE-PYSVSVGCGAAEQELADVTGGDGSSLSSLLQAMLEQLLLPHL--KPLTDPDGRLQ 136 E ++ + C A+ A+ D L ++ + + ++ K L G+ Sbjct 66 TYDEGNVNLQIDCPASVA--ANRIKKD--HLQTMTTIIYNLCIKNNINKKILCILPGKFA 121 Query 137 WRISIDVIVLRAGGCLLDAVSLAIWGALKALKLPNVMVEEEDEKD---QGLAITEYKVSC 193 W + I+V+VL AGG LLD +S+AI+ ALK P V ++E E++ ++ +Y++ Sbjct 122 WSVDINVMVLNAGGGLLDIISIAIYVALKDTFFPIVKPKKEIEEENTFHEISNKDYQLEI 181 Query 194 DERIAAGTPYPIDTVPILITAAQIGDTYVWDLTEIEATCGDSFLVAAFLPSGACVGLQKF 253 E PY + +PI I+ +I + Y++D++++E + V A G CV K Sbjct 182 VENEHVNFPY--ENIPICISIGEINNKYIYDMSKVEEELVQNIFVVAITSKGKCVAFHKL 239 Query 254 GHVLADCRTLQTTLTTSQRLSREILEDLQR 283 + + ++ S ++S + + + + Sbjct 240 YGISMEISSILNITENSSKISHTLFDKIHQ 269 > hsa:23016 EXOSC7, EAP1, FLJ26543, KIAA0116, RRP42, Rrp42p, hRrp42p, p8; exosome component 7 (EC:3.1.13.-); K12589 exosome complex component RRP42 Length=291 Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 127/281 (45%), Gaps = 10/281 (3%) Query 13 ISRAETAFVREGVACGVRGDGRGRAELRPRVLAVDLLPFSCSSAAIQTEENTVIATVDAD 72 +S AE ++ GV +R DGRG + R + D++ + SA ++ ++ V A+ Sbjct 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65 Query 73 VILPGGGGNQEPY-SVSVGCGAAEQELADVTGGD--GSSLSSLLQAMLEQLLLPHLKPLT 129 + P E Y V C A+ + GGD G+ +++ L + LK L Sbjct 66 MGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLC 125 Query 130 DPDGRLQWRISIDVIVLRAGGCLLDAVSLAIWGALKALKLPNVMVEEEDEKDQGLAITEY 189 W + +DV++L GG L DA+S+A+ AL ++P V V E++E + + +++ Sbjct 126 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185 Query 190 KVSCDERIAAGTPYPIDTVPILITAAQIGDTYVWDLTEIEATCGDSFLVAAFLPSGACVG 249 C ++ VP ++T +IG +V D T E C + L+ + G Sbjct 186 PYDC-------IRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTC 238 Query 250 LQKFGHVLADCRTLQTTLTTSQRLSREILEDLQRQAEMKKS 290 ++K G D ++ + T +R+ + + LQ ++S Sbjct 239 MRKVGKGSLDPESIFEMMETGKRVGKVLHASLQSVVHKEES 279 > mmu:66446 Exosc7, 2610002K22Rik, AV212732, mKIAA0116; exosome component 7; K12589 exosome complex component RRP42 Length=291 Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 125/274 (45%), Gaps = 10/274 (3%) Query 12 AISRAETAFVREGVACGVRGDGRGRAELRPRVLAVDLLPFSCSSAAIQTEENTVIATVDA 71 A+S AE ++ GV +R DGRG + R + D++ + SA ++ ++ V A Sbjct 5 ALSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKA 64 Query 72 DVILPGGGGNQEPY-SVSVGCGAAEQELADVTGGD--GSSLSSLLQAMLEQLLLPHLKPL 128 ++ P E Y V C A + GGD G+ +++ L + L+ L Sbjct 65 EMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLRSL 124 Query 129 TDPDGRLQWRISIDVIVLRAGGCLLDAVSLAIWGALKALKLPNVMVEEEDEKDQGLAITE 188 W + +DV++L GG L DA+S+A+ AL ++P V V E++E + + +++ Sbjct 125 CISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKDIELSD 184 Query 189 YKVSCDERIAAGTPYPIDTVPILITAAQIGDTYVWDLTEIEATCGDSFLVAAFLPSGACV 248 C ++ VP ++T +IG +V D T E C + L+ + G Sbjct 185 DPYDC-------IRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVT 237 Query 249 GLQKFGHVLADCRTLQTTLTTSQRLSREILEDLQ 282 ++K G D ++ + +S+R+ + + LQ Sbjct 238 CMRKVGKGSLDPESIFEMMESSKRVGKVLHVSLQ 271 > dre:550247 zgc:110717; K12589 exosome complex component RRP42 Length=291 Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/286 (24%), Positives = 127/286 (44%), Gaps = 14/286 (4%) Query 13 ISRAETAFVREGVACGVRGDGRGRAELRPRVLAVDLLPFSCSSAAIQTEENTVIATVDAD 72 + AE ++ GV +R DGRG + R + D++ + SA I V+ + A+ Sbjct 6 VCEAEKVYIMHGVRDDLRLDGRGCEDYRHMEIETDVVSNTDGSAKISLGHTDVLVGIKAE 65 Query 73 VILPGGGGNQEPY-SVSVGCGAAEQELADVTGGD--GSSLSSLLQAMLEQLLLPHLKPLT 129 + P E Y V C A + GG+ G LS+ L + L+ L Sbjct 66 IGKPRPMVPDEGYLEFFVDCSANATPEFEGRGGEELGVELSNTLYKVFNNRHSLDLRSLC 125 Query 130 DPDGRLQWRISIDVIVLRAGGCLLDAVSLAIWGALKALKLPNVMVEEEDEKDQGLAITEY 189 G W + +DV++L+ G L DA+S+AI AL ++P V + E++E + + +++ Sbjct 126 ICPGENCWVLYVDVLLLQCDGNLFDAISIAIKAALFNTRIPKVHISEDEEGGKEIELSDD 185 Query 190 KVSCDERIAAGTPYPIDTVPILITAAQIGDTYVWDLTEIEATCGDSFLVAAFLPSGACVG 249 C ++ VP ++T +IG +V D T E C + L+ A +G Sbjct 186 PFDC-------MRLNVENVPCIVTLCKIGHRHVVDATLQEKACSVASLLIAVTHTGMVTC 238 Query 250 LQKFGHVLADCRTLQTTLTTSQRLSRE----ILEDLQRQAEMKKSR 291 ++K G D ++ +R+ + +++ LQ++ + K R Sbjct 239 VRKMGGGSLDPESIFEMTEAGKRVGKSLHAPLMDLLQKEESLGKKR 284 > xla:446601 exosc7, MGC81766; exosome component 7; K12589 exosome complex component RRP42 Length=291 Score = 77.4 bits (189), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/281 (23%), Positives = 125/281 (44%), Gaps = 10/281 (3%) Query 13 ISRAETAFVREGVACGVRGDGRGRAELRPRVLAVDLLPFSCSSAAIQTEENTVIATVDAD 72 +S AE +V GV +R DGRG + R + D++ + SA ++ V+ V A+ Sbjct 6 LSEAEKVYVLHGVQDDLRTDGRGCEDYRCIEVESDVVSNTTGSARVKIGHTDVLVGVKAE 65 Query 73 VILPGGGGNQEPY-SVSVGCGAAEQELADVTGGD--GSSLSSLLQAMLEQLLLPHLKPLT 129 + P E Y V C A + GG+ G+ ++ +L + + L+ L Sbjct 66 MGTPKLERPGEGYLEFFVDCSANAAPEFEGRGGEELGTEIAFMLYKIFDNRSSIDLESLC 125 Query 130 DPDGRLQWRISIDVIVLRAGGCLLDAVSLAIWGALKALKLPNVMVEEEDEKDQGLAITEY 189 W + +DV++L GG L D +S+A+ AL ++P V V E++E + +++ Sbjct 126 IQAREHCWVLYVDVLLLECGGNLFDTISVAVKAALFNARIPKVRVLEDEEGGKDFELSDD 185 Query 190 KVSCDERIAAGTPYPIDTVPILITAAQIGDTYVWDLTEIEATCGDSFLVAAFLPSGACVG 249 C + VP ++T ++IG +V D T E C + L+ + G Sbjct 186 PYDC-------VRLNVVNVPCIVTLSRIGHRHVVDATLQEEACSVASLLISVTSKGILTC 238 Query 250 LQKFGHVLADCRTLQTTLTTSQRLSREILEDLQRQAEMKKS 290 ++K G D ++ + T + +++ + LQ ++S Sbjct 239 MRKIGKGSLDPESIFEMIETGKHVAKSLHTSLQSALNQEES 279 > ath:AT3G07750 3' exoribonuclease family domain 1-containing protein; K12589 exosome complex component RRP42 Length=286 Score = 77.0 bits (188), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 71/282 (25%), Positives = 129/282 (45%), Gaps = 19/282 (6%) Query 13 ISRAETAFVREGVACGVRGDGRGRAELRPRVLAVDLLPFSCSSAAIQTEENTVIATVDAD 72 +S E F++ G+A +R DGR R RP + ++P + SA ++ VIA+V A+ Sbjct 3 LSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAE 62 Query 73 VILPGG-GGNQEPYSVSVGCGAAEQELADVTGGDGSSLSSLLQAMLEQLLLP-------- 123 + P ++ +V + C + GG+ LSS L L++ LL Sbjct 63 IGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGE--ELSSELALALQRCLLGGKSGAGAG 120 Query 124 -HLKPLTDPDGRLQWRISIDVIVLRAGGCLLDAVSLAIWGALKALKLPNVMVEEEDEKDQ 182 +L L +G++ W + ID +V+ + G LLDA+ AI AL +P V V E D+ Sbjct 121 INLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDE 180 Query 183 GLAITEYKVSCDERIAAGTPYPIDTVPILITAAQIGDTYVWDLTEIEATCGDSFLVAAFL 242 E +S +E + + +VP+++T ++G Y+ D T E + S + + Sbjct 181 Q---PEIDISDEEYLQ----FDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVN 233 Query 243 PSGACVGLQKFGHVLADCRTLQTTLTTSQRLSREILEDLQRQ 284 +G GL K D + ++ ++ ++ ++ L + Sbjct 234 RTGHICGLTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSE 275 > cel:F31D4.1 exos-7; EXOSome (multiexonuclease complex) component family member (exos-7); K12589 exosome complex component RRP42 Length=312 Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 19/235 (8%) Query 13 ISRAETAFVREGVACGVRGDGRGRAELRPRVLAVDLLPFSCSSAAIQTEENT-VIATVDA 71 +S E F+ G +R DGR + R +L +L + S +Q + T V+A + Sbjct 5 LSDDEKLFLITGAEANIRNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKL 64 Query 72 DVILPGGGGNQEP-----YSVSVGCGAAEQELADVTGGD--GSSLSSLLQAMLEQLL--L 122 ++ +EP ++V A+ Q GGD LS+ QA + L + Sbjct 65 ELESYDAETEKEPKQPINFNVDFSANASSQFAG--KGGDEYAEELSAAFQAAYSKALDIM 122 Query 123 PHLKPLTDPDGRLQWRISIDVIVLRAGGCLLDAVSLAIWGALKALKLPNVMVEEEDEKDQ 182 P+L DG +W+I++D+ VL+ G + DA+S+AI GAL L+ P V +D Sbjct 123 PNLAKTQLADG-YRWKINVDISVLQWDGSVSDAISIAIIGALSDLEFPEGDVAPDDGGKV 181 Query 183 GLAITEYKVSC---DERIAAGTPYPIDTV--PILITAAQIGDTYVWDLTEIEATC 232 + + KV+ DE + + +D + P+L+T ++IG + D T E C Sbjct 182 RIVLKRPKVAGNVRDENVQVAM-WKLDVMRCPLLLTISKIGTANLVDCTPEEECC 235 > cel:F37C12.13 exos-9; EXOSome (multiexonuclease complex) component family member (exos-9); K12586 exosome complex component RRP43 Length=434 Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 96/237 (40%), Gaps = 27/237 (11%) Query 13 ISRAETAFVREGVACGVRGDGRGRAELRPRVLAVDLLPFSCSSAAIQTEENT-VIATVDA 71 ++ E A + E + G R D R E R V L+ + AI T NT V+A V A Sbjct 6 VTNCEKAVILEALKIGKRFDFRSLEEFRD----VKLVVGAEVGTAICTIGNTKVMAAVSA 61 Query 72 DVILPGGGGNQEPYS------VSVGCGAAEQELADVTGGDGSSLSSLLQAMLEQLLLPHL 125 ++ P P+ V + A D G G L LL+ ++ + Sbjct 62 EIAEPSS---MRPHKGVINIDVDLSPMANYANEHDRLGSKGMELIRLLELIIRDSRCIDV 118 Query 126 KPLTDPDGRLQWRISIDVIVLRAGGCLLDAVSLAIWGALKALKLPNVMVEEEDEKDQGLA 185 + L G+ W+I +DV +L G LLD LA AL+ + PNV +E L Sbjct 119 EALCIRAGKEIWKIRVDVRILDEDGSLLDCACLAAITALQHFRRPNVTLEPH----HTLI 174 Query 186 ITEYKVSCDERIAAGTPYPIDTVPILITAAQI--GDTYVWDLTEIEATCGDSFLVAA 240 +EY+ A P I +PI T + G V D T+ E C D +V A Sbjct 175 YSEYE-------KAPVPLNIYHMPICTTIGLLDKGQIVVIDPTDKETACLDGSIVVA 224 > dre:323016 exosc8, MGC174638, wu:fb79a10, zgc:110381; exosome component 8; K12586 exosome complex component RRP43 Length=277 Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 14/183 (7%) Query 19 AFVREGVACGVRGDGRGRAELRPRVLAVDLLPFSCSSAAIQTEENTVIATVDADVILPGG 78 +F++E R DGR E RP L ++ + + SA ++ TVI + A++ +P Sbjct 16 SFLKENC----RPDGRELGEFRPTTLNINSISTADGSALVKIGNTTVICGIKAELAVPPS 71 Query 79 GGNQEPY---SVSVGCGAAEQELADVTGGDGSSLSSLLQAMLEQLLLPHLKPLTDPDGRL 135 + Y +V + + + A G + S + ++E L +L+ L +L Sbjct 72 EAQNKGYLVPNVDLPPLCSSRFRAGPPGEQAQAASQFIADVIESSDLINLEELCIEKAKL 131 Query 136 QWRISIDVIVLRAGGCLLDAVSLAIWGALKALKLPNVMVEEED-------EKDQGLAITE 188 W + D++ L G LLDA + ALK +LP V + +E EK + L I Sbjct 132 CWVLYCDIMCLDYDGNLLDACITVLLAALKTAQLPEVTINKETDLAEVDIEKKRRLKINR 191 Query 189 YKV 191 + V Sbjct 192 HPV 194 > hsa:11340 EXOSC8, CIP3, EAP2, OIP2, RP11-421P11.3, RRP43, Rrp43p, bA421P11.3, p9; exosome component 8 (EC:3.1.13.-); K12586 exosome complex component RRP43 Length=276 Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 3/161 (1%) Query 20 FVREGVACGVRGDGRGRAELRPRVLAVDLLPFSCSSAAIQTEENTVIATVDADVILPGGG 79 + R + R DGR E R + + + + SA ++ TVI V A+ P Sbjct 13 YYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTD 72 Query 80 GNQEPY---SVSVGCGAAEQELADVTGGDGSSLSSLLQAMLEQLLLPHLKPLTDPDGRLQ 136 + Y +V + + + + G + S + ++E + + L G+L Sbjct 73 APDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLV 132 Query 137 WRISIDVIVLRAGGCLLDAVSLAIWGALKALKLPNVMVEEE 177 W + D+I L G +LDA + A+ ALK ++LP V + EE Sbjct 133 WVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEE 173 > xla:496046 hypothetical LOC496046; K12586 exosome complex component RRP43 Length=276 Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 10/181 (5%) Query 30 RGDGRGRAELRPRVLAVDLLPFSCSSAAIQTEENTVIATVDADVILPGGGGNQEPY---S 86 R DGR E R + V + + SA ++ TV+ V A+ P + Y + Sbjct 23 RPDGRELTEFRTTTINVGSITTADGSALVKLGNCTVLCGVKAEFAAPPADAPNKGYVVPN 82 Query 87 VSVGCGAAEQELADVTGGDGSSLSSLLQAMLEQLLLPHLKPLTDPDGRLQWRISIDVIVL 146 V + + Q G + S + +++ + + L G+L W + D+I L Sbjct 83 VDLSPLCSSQFRPGPPGEEAQVASQFMADVIDNSQMLLKEDLCIRHGKLAWVLYCDLICL 142 Query 147 RAGGCLLDAVSLAIWGALKALKLPNVMVEEEDEKDQGLAITEYKVSCDERIAAGTPYPID 206 G LLD + A+ AL+ ++LP+V + EE GLA K C +I +PI Sbjct 143 DYDGNLLDTCTCALVAALQNVRLPSVKINEE----TGLAEVNLKTKCALKILK---HPIA 195 Query 207 T 207 T Sbjct 196 T 196 > xla:379078 exosc8, MGC132146, MGC52847; exosome component 8; K01149 [EC:3.1.13.-] Length=276 Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 11/181 (6%) Query 20 FVREGVACGVRGDGRGRAELRPRVLAVDLLPFSCSSAAIQTEENTVIATVDADVILPGGG 79 F++E AC R DGR E R + V + + SA ++ TV+ V A++ P Sbjct 17 FLKE--AC--RPDGRELTEFRTTTINVGSITTADGSALVKLGNCTVLCGVKAELAAPPAD 72 Query 80 GNQEPY---SVSVGCGAAEQELADVTGGDGSSLSSLLQAMLEQLLLPHLKPLTDPDGRLQ 136 + Y +V + + Q G + S + +++ + + L G+L Sbjct 73 SPDKGYVVPNVDLTPLCSSQFRPGPPGEEAQVASQFMADVIDNSQMLLKEDLCIAHGKLA 132 Query 137 WRISIDVIVLRAGGCLLDAVSLAIWGALKALKLPNVMVEEEDEKDQGLAITEYKVSCDER 196 W + D+I L G LLD A+ AL+ ++LP+V + EE GLA K C + Sbjct 133 WVLYCDLICLDYDGNLLDTCMCALVAALQNVRLPSVKINEE----TGLAEVNLKTKCALK 188 Query 197 I 197 I Sbjct 189 I 189 > mmu:69639 Exosc8, 2310032N20Rik, CIP3, KIAA4013, mKIAA4013; exosome component 8; K12586 exosome complex component RRP43 Length=280 Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 7/165 (4%) Query 20 FVREGVACGVRGDGRGRAELRPRVLAVDLLPFSCSSAAIQTEENTVIATVDADVILPGGG 79 + R + R DGR E R + + + + SA ++ TVI V A+ P Sbjct 13 YYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPPVD 72 Query 80 GNQEPYSVSVGCG-------AAEQELADVTGGDGSSLSSLLQAMLEQLLLPHLKPLTDPD 132 Y V + + + G + S + +++ + + L Sbjct 73 APDRGYVVFLSVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCISP 132 Query 133 GRLQWRISIDVIVLRAGGCLLDAVSLAIWGALKALKLPNVMVEEE 177 G+L W + D+I L G +LDA + A+ ALK ++LP V + EE Sbjct 133 GKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEE 177 > cpv:cgd7_230 RPR45-like archaeo-eukaryotic exosomal RNAse PH ; K01149 [EC:3.1.13.-] Length=291 Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust. Identities = 48/224 (21%), Positives = 95/224 (42%), Gaps = 11/224 (4%) Query 28 GVRGDGRGRAELRPRVLAVDLLPFSCSSA-AIQTEENTVIATVDADVILPG--GGGNQEP 84 GVR DGR R L ++ L S A +++ ++ IA +I G N Sbjct 22 GVRCDGRKPEVCRNFKLELNELSSSNYGAVSVRIGNSSYIACCSPQIIHTGLDQESNNAI 81 Query 85 YSVSVGCGAAEQELADVTGGDGSS---LSSLLQAMLEQLLLPHLKPLTDPDGR-LQWRIS 140 + + + TG S +S+ + + + ++ +T G+ L W I Sbjct 82 TNTRINVSLELPTICGFTGNPNHSNFVSNSITECLNDSRIINKEAFITKFQGKELHWLID 141 Query 141 IDVIVLRAGGCLLDAVSLAIWGALKALKLPNVMVEEEDEKDQGLA---ITEYKVSCDERI 197 I V+ L G LD +A +L+ LP +V ++D ++ I++ +V ++ + Sbjct 142 IKVVCLSYDGNPLDYTLIASIASLRNTILPKNLVWDDDYNWFRISSDPISKDEVKREQMM 201 Query 198 AAGTPYPIDTVPILITAAQIGDT-YVWDLTEIEATCGDSFLVAA 240 + + + VPI ++ + + D+ +V D +E + G S + Sbjct 202 QDSSSFFLKKVPIFVSFSYLNDSIWVCDPNYMEDSIGSSVTICC 245 > ath:AT3G12990 RRP45a; RRP45a (Ribonuclease PH45a); 3'-5'-exoribonuclease/ RNA binding Length=307 Score = 37.7 bits (86), Expect = 0.054, Method: Compositional matrix adjust. Identities = 66/295 (22%), Positives = 114/295 (38%), Gaps = 29/295 (9%) Query 17 ETAFVREGVACGVRGDGRGRAELRPRVLAVDLLPFSCSSAAIQTEENTVIATVDADVILP 76 E+ FV + +R DGRG + R + S+ +Q + V+A V A ++ P Sbjct 15 ESKFVESALQSELRVDGRGLYDYRKLTIKFGK---EYGSSQVQLGQTHVMAFVTAQLVQP 71 Query 77 GGGGNQEPYSVSVGCGAAEQELADVT---GGDGSS---LSSLLQAMLEQLLLPHLKPLTD 130 P S +AD + G G S L ++ L + + L Sbjct 72 Y---KDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRAVDTESLCV 128 Query 131 PDGRLQWRISIDVIVLRAGGCLLDAVSLAIWGALKALKLPNVMVEEEDEKDQGLAITEYK 190 G+L W + ID+ +L GG L+DA ++A AL + P+ V ++ +D + E + Sbjct 129 LAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVIIHPPEER 188 Query 191 VSCDERIAAGTPYPIDTVPILITAA--QIGDTYVWDLTEIEATCGDSFLVAAFLPSGACV 248 P I +PI T G V D T +E + +G Sbjct 189 --------EPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDIC 240 Query 249 GLQKFGH------VLADC-RTLQTTLTTSQRLSREILEDLQRQAEMKKSRLNGNL 296 +QK G V+ C R + + + ++ R+ +E R+ +K + + L Sbjct 241 AIQKPGEEGVNQSVILHCLRLASSRASATTKIIRDAVEAYNRERSSQKVKRHHTL 295 > hsa:56957 OTUD7B, CEZANNE, ZA20D1; OTU domain containing 7B (EC:3.4.19.12); K11860 OTU domain-containing protein 7 [EC:3.-.-.-] Length=843 Score = 34.3 bits (77), Expect = 0.56, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 12/74 (16%) Query 97 ELADVTGGDGSSLSSLLQAMLEQLLLPHLKPLTDPDGRLQWRISIDVIVLR--------A 148 +L D+T + S + + ++EQ +L L+ GRL W +S+D R Sbjct 136 QLPDLTVYNEDFRSFIERDLIEQSMLVALEQA----GRLNWWVSVDPTSQRLLPLATTGD 191 Query 149 GGCLLDAVSLAIWG 162 G CLL A SL +WG Sbjct 192 GNCLLHAASLGMWG 205 > mmu:229603 Otud7b, 2900060B22Rik, 4930463P07Rik, AI462125, CEZANNE, Trabid2, Za20d1; OTU domain containing 7B; K11860 OTU domain-containing protein 7 [EC:3.-.-.-] Length=840 Score = 33.5 bits (75), Expect = 0.90, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 8/38 (21%) Query 133 GRLQWRISIDVIVLR--------AGGCLLDAVSLAIWG 162 GRL W +S+D R G CLL A SL +WG Sbjct 168 GRLNWWVSMDSTCQRLLPLATTGDGNCLLHAASLGMWG 205 > dre:450057 exosc9, im:6909054, zgc:101680; exosome component 9; K03678 exosome complex component RRP45 Length=393 Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 13/127 (10%) Query 133 GRLQWRISIDVIVLRAGGCLLDAVSLAIWGALKALKLPNVMVEEEDEKDQGLAITEYKVS 192 G W+I +DV VL G L+DA S+A AL + P+V + QG +T + Sbjct 126 GEKVWQIRVDVHVLNHDGNLMDAASIAAISALSHFRRPDVAI-------QGRDVTVF--G 176 Query 193 CDERIAAGTPYPIDTVPILITAAQI--GDTYVWDLTEIEATCGDSFLVAAFLPSGACVGL 250 +ER P I +PI ++ A G + D E E D LV A + Sbjct 177 PEER--DPIPLSIYHMPICVSFAFFLQGSFLLVDPCEREERVKDGLLVIAMNKHREICSI 234 Query 251 QKFGHVL 257 Q G ++ Sbjct 235 QSSGGIM 241 > mmu:237558 Gm239; predicted gene 239 Length=904 Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 16/81 (19%) Query 42 RVLAVDLLPFSCSSAAIQTEENTVIATVDADVILPGGGGNQEPYSVSVGCGAAEQELADV 101 R++ D P S+ I T T + + ILP A +E+ DV Sbjct 470 RIVQYDYKPEFASAMGINTAHQTGMIAQEVQEILP----------------RAVREVGDV 513 Query 102 TGGDGSSLSSLLQAMLEQLLL 122 TGG+G +L + L +Q+ + Sbjct 514 TGGNGETLENFLMVDKDQIFM 534 > cel:F41G3.14 exos-8; EXOSome (multiexonuclease complex) component family member (exos-8) Length=277 Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 0/56 (0%) Query 135 LQWRISIDVIVLRAGGCLLDAVSLAIWGALKALKLPNVMVEEEDEKDQGLAITEYK 190 L+W++ I V VL G LDA A+ AL KLP++++ + + + T+ + Sbjct 124 LEWQLHIIVKVLSLEGNFLDAAVCALGAALVDAKLPSIVLNHSEGDESTIEKTQIQ 179 > ath:AT3G60500 CER7; CER7 (ECERIFERUM 7); 3'-5'-exoribonuclease/ RNA binding Length=438 Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust. Identities = 65/302 (21%), Positives = 117/302 (38%), Gaps = 38/302 (12%) Query 17 ETAFVREGVACGVRGDGRGRAELRPRVLAVDLLPFSCSSAAIQTEENTVIATVDADVILP 76 E+ FV + +R DGRG + R + S+ +Q + V+ V A ++ P Sbjct 15 ESKFVETALQSELRVDGRGLYDYRKLTIK---FGKEYGSSEVQLGQTHVMGFVTAQLVQP 71 Query 77 GGGGNQEPYSVSVGCGAAEQELADVT------GGDGSSLSSLLQAMLEQLLLPHLKPLTD 130 P S+ +AD + G L ++ L + + L Sbjct 72 Y---KDRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDTESLCV 128 Query 131 PDGRLQWRISIDVIVLRAGGCLLDAVSLAIWGALKALKLPNVMVEEEDEKDQGLAITEYK 190 G++ W + ID+ +L GG L+DA ++A AL + P+ V E+ G + + Sbjct 129 LAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGEN----GQEVIIHP 184 Query 191 VSCDERIAAGTPYPIDTVPILITAA--QIGDTYVWDLTEIEATCGDSFLVAAFLPSGACV 248 + E + P I +PI T G+ V D T +E + +G Sbjct 185 LEEREPL----PLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDIC 240 Query 249 GLQKFGH------VLADCRTLQTT--LTTSQRLSREI--------LEDLQRQAEMKKSRL 292 +QK G V+ C L ++ T++ + E+ L+ ++R + KS + Sbjct 241 AIQKPGEEGVNQSVILHCLRLASSRAAATTKIIREEVEAYNCERSLQKVKRHPTLAKSEV 300 Query 293 NG 294 +G Sbjct 301 SG 302 > dre:567622 eif2c1; eukaryotic translation initiation factor 2C, 1; K11593 eukaryotic translation initiation factor 2C Length=895 Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust. Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 0/23 (0%) Query 67 ATVDADVILPGGGGNQEPYSVSV 89 A VD DV LPG GG P+ VS+ Sbjct 124 AGVDLDVTLPGEGGKDRPFKVSI 146 > mmu:214150 Eif2c3, AW048688, Ago3, C130014L07Rik; eukaryotic translation initiation factor 2C, 3; K11593 eukaryotic translation initiation factor 2C Length=860 Score = 30.8 bits (68), Expect = 6.6, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Query 47 DLLPFSCSSAAIQTEENTVIAT--VDADVILPGGGGNQEPYSVSV 89 D P ++ T +AT VD DV LPG GG P+ VSV Sbjct 81 DRRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSV 125 > hsa:192669 EIF2C3, AGO3, FLJ12765, MGC86946; eukaryotic translation initiation factor 2C, 3; K11593 eukaryotic translation initiation factor 2C Length=860 Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Query 47 DLLPFSCSSAAIQTEENTVIAT--VDADVILPGGGGNQEPYSVSV 89 D P ++ T +AT VD DV LPG GG P+ VS+ Sbjct 81 DRRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSI 125 Lambda K H 0.318 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 12284032348 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40